Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1447 259 6e-64 seq1789 167 3e-36 seq5725 95.1 2e-14 seq2579 91.5 2e-13 >seq1447 Length=163572 Score = 259 bits (286), Expect = 6e-64 Identities = 479/700 (68%), Gaps = 7/700 (1%) Strand=Plus/Minus Query 195290 ATGTCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAA 195349 ||| | | ||| || ||||||||||| || || || ||||||||||| || | | | Sbjct 41742 ATGGCACCAGCAATCGGTATCGATTTGGGTACGACCTACTCATGTGTGGGCATCTACAGA 41683 Query 195350 AATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTT 195409 |||| || | ||||| ||| | || ||||| || ||||| ||||| || |||| ||| Sbjct 41682 GATGACCGCATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTC 41623 Query 195410 GCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAAC 195469 ||||| || || | || |||||| | || ||| ||||||| || || || |||||| Sbjct 41622 GCCTTCACCGACACCGAGCGTCTCATCGGTGATTCCGCAAAGAACCAAGTCGCCATGAAC 41563 Query 195470 CCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAA 195529 || |||| || ||||| ||||| ||||| || || || || ||||| ||| | Sbjct 41562 CCCGTCAACACAGTCTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTCGACGATGCTGAG 41503 Query 195530 GTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGC 195587 || || | ||| || ||| ||| | | | ||| | || | | ||||| |||| Sbjct 41502 GTGCAGGCCGACATGAAGCACTTTCCCT-TCAAGGTCATCAACAAGGGTGGC----AAGC 41448 Query 195588 CTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGT 195647 | | | | || || || | || ||| |||| || || | || || || || || | Sbjct 41447 CGGTCGTGCAGGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCAT 41388 Query 195648 CTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAG 195707 | ||||| | | |||||| ||||||||||| | | | | ||| || || || Sbjct 41387 CAATGGTCCTCACCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGCACAGTCAACA 41328 Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 | || || || ||||| || || ||||||| || || || || || || || ||||||| Sbjct 41327 ACGCTGTCGTCACTGTCCCAGCATACTTCAACGACTCTCAGCGCCAAGCAACCAAGGACG 41268 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | || || || || ||| ||| | || |||||||| || || || || || | Sbjct 41267 CTGGTCTCATCGCCGGCCTGAACGTTCTGCGCATCATCAATGAGCCTACCGCCGCGGCCA 41208 Query 195828 TTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 |||| || ||||| |||||||| | || | || || || | ||||| || | | Sbjct 41207 TTGCCTACGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGACTTGG 41148 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 | ||||| || || |||||||| ||||| | ||||| | || || ||||| || ||| Sbjct 41147 GCGGTGGCACCTTCGATGTCTCTCTTCTTACCATTGAGGAGGGCATCTTCGAGGTCAAGT 41088 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || || |||||| | |||||||| || ||||| Sbjct 41087 CCACTGCCGGAGACACTCATTTGGGTGGTGAGGACTTCGA 41048 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| ||||| || || || ||||||||||||||||| |||||||| ||||| ||| Sbjct 89221 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 89162 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| |||| |||||| || |||||||| || || ||||| || || || ||| | Sbjct 89161 GACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 89102 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || || || || || || || || ||||| || || | || |||||| | || ||| Sbjct 89101 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTTTGAGCGACTACAACATCCAGAAG 89042 Query 172051 G 172051 | Sbjct 89041 G 89041 >seq1789 Length=118145 Score = 167 bits (184), Expect = 3e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || || || |||||||| ||||| || |||| Sbjct 19491 GTGGTATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGT 19432 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||||||||| ||| | || | ||||||||||| ||||| || || ||||| | Sbjct 19431 CATCAGACACAATCGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCGG 19372 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||| || || || || || || || || |||||||| || || || || || |||||| Sbjct 19371 ATCAACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATT 19312 Query 172037 ACAACGTTCAAAAGGAG 172053 ||||| |||| |||||| Sbjct 19311 ACAACATTCAGAAGGAG 19295 Score = 156 bits (172), Expect = 6e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 |||||||| || |||||||| ||||||||||| || || || ||||| || | || | Sbjct 19918 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 19859 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| ||||| ||||| |||||||| || || ||||| || || || || || || || Sbjct 19858 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTCGCGGGAAAG 19799 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 |||||||| ||||| || |||||| || |||||| |||| |||||||| ||||| ||| Sbjct 19798 CAGCTTGAGGATGGGCGCACCCTCAGCGACTACAACATTCAGAAGGAGTCCACTCTCCAC 19739 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | || || | || || |||||| Sbjct 19738 TTGGTGCTGCGCCTCCGTGGTGGT 19715 >seq5725 Length=16029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||| ||||||||||||||||| || || || || || || || || || || ||||| || Sbjct 12331 AGACAAGGAAGGCATTCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGA 12390 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || |||||| | || |||||| | || |||||||| || || ||| | ||||| Sbjct 12391 GGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTTCT 12450 Query 172074 AAGGCTTCGGGGTGG 172088 | || || ||||| Sbjct 12451 CCGTCTCCGTGGTGG 12465 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||||||||| || ||||| Sbjct 12168 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAATCGTCC 12227 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAG 171960 ||||| ||||| || |||| ||||||| || | |||| Sbjct 12228 GACACCATCGACAATGTCAAGTCCAAGATCCAGGGTAAG 12266 >seq2579 Length=129564 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/331 (66%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| || || || | | | || | | || | | ||||| || ||| Sbjct 66614 AAGATGAAGGAGGTCGCCGAGTCCTACCTCGGAGAGAAGGTCACCAACGCAGTCGTCACT 66555 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || | || || || || ||||| || | || || || Sbjct 66554 GTCCCAGCCTACTTCAACGACGCTCAGCGTGCCGCCACCAAGGATGCCGGCGCGATCGCT 66495 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| ||| | | | || || || || || || || | || || || || Sbjct 66494 GGTCTCAACGTTCTCCGCGTGGTTAACGAGCCCACCGCCGCCGCTTTGGCCTACGGCCTC 66435 Query 195842 GACAAGA---ACAAGGA-CGA-AGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 ||||||| ||||||| || |||| | | ||| |||||||||||||||| Sbjct 66434 GACAAGACCGACAAGGAACGCCAGATCA--------TCGTCTACGATCTCGGTGGTGGTA 66383 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | || |||||||| | | | |||| ||| | ||||| || || |||| || | Sbjct 66382 CTTTCGATGTCTCCGTCTTGACCGTTGACCAGGGTGTGTTCGAGGTTCAGTCTACCGCCG 66323 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||| || ||||| |||||||| |||||||| Sbjct 66322 GTGACACCCATCTCGGTGGTGAGGATTTCGA 66292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657805700484400