Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4813 168 1e-35 seq1700 158 2e-32 seq2271 123 4e-22 seq3840 104 4e-16 seq5130 91.5 2e-12 >seq4813 Length=139967 Score = 168 bits (186), Expect = 1e-35 Identities = 180/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 22186 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGGAG 22245 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT-AGTGC 1485589 ||| || || |||| ||||||||| ||||| | | ||||||| |||||| ||| Sbjct 22246 GATGAGTCGGACGGAGGTCTGGATTTCGCGCGAGGAGATCGTGGACTTCTTGTTGTATGC 22305 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | |||||||| ||| ||| |||| ||||||||||| || ||||||| Sbjct 22306 G-GCCAGCTTGGATGCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 22364 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| ||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 22365 GGATGGACATGGCACGGTTGGAGATACCGGTGTCAGGGTGGACCTGCTTGAGGAC 22419 >seq1700 Length=96718 Score = 158 bits (174), Expect = 2e-32 Identities = 235/330 (71%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||| ||| ||||||||||||||| || |||||| Sbjct 69490 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTC 69549 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | |||| || ||||| ||||| ||||| | |||||||||| Sbjct 69550 TTCAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCTCAATGGCGGCAAAG 69609 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||| || |||||| ||| | || | | ||||||| || |||||| Sbjct 69610 GCGATGAGACGGCAGGCAAAGGTG---GAGTTCTTGTCGGAGATCCACCGCAGCGCCCAG 69666 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC--TTC 794577 || ||||| || | | | || | ||||||||||| ||||||| || | | | Sbjct 69667 TCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTACGTGCGTTGC 69726 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | || || ||| ||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 69727 TTG---GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGAGTGGATGTTC 69783 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||||||| || |||||| Sbjct 69784 TCCATCATGATCTGGAAGCCGTAGAAGCAG 69813 Score = 154 bits (170), Expect = 2e-31 Identities = 227/316 (72%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| ||| Sbjct 69167 TGACACCGGCCTTTTGGTAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGA 69226 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||||||||| | |||| Sbjct 69227 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTGCCGA 69286 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || |||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 69287 GTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCA 69346 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 | |||| |||||| || ||| || | || ||| ||||| | |||||| |||| ||| Sbjct 69347 TTCCGAGGAGCGCACATGGG-AGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCC 69405 Query 794130 TCGATGATGATCTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 ||| ||||||| | | | | || | | || ||||||| | ||| | | | || Sbjct 69406 TCGGTGATGATGT-CTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGAGAACAG 69464 Query 794189 CAGGCAGGCAAAGTCG 794204 |||||||||||||||| Sbjct 69465 CAGGCAGGCAAAGTCG 69480 Score = 120 bits (132), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | ||| || || ||||||| || |||||||| Sbjct 69808 AAGCAGCGGGCCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTG 69867 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| || || ||||| ||||| |||||||| ||| ||| ||||||||| Sbjct 69868 ACGATGCCATCCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCG 69927 Query 796261 TCGCTGAG---CGAGACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGC 796313 ||| |||| | | ||||| |||| || | ||| |||| ||||||||| Sbjct 69928 TCGTTGAGACGCTTGTTCCAGT----CGTGAAGATCCTTGGAGAGATCGATCTCCTCGGC 69983 Query 796314 GGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTG 796361 |||||| |||||||||||||||||||||||||| | ||| ||| |||| Sbjct 69984 GGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAGATCTGTTG 70031 >seq2271 Length=357209 Score = 123 bits (136), Expect = 4e-22 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | || ||||| ||||||||| | || |||||| | || |||||| |||| Sbjct 145220 CTGTTCGAGATCATTCTCGCAGCCAACTACATGGATATCAAGGCGCTTCTCGATGTGGGC 145161 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||||||||||| || ||| | |||||||||||||| |||||||| |||||||| || || Sbjct 145160 TGCAAGACCGTCGCAAACATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTC 145101 Query 2035749 AACATC 2035754 |||||| Sbjct 145100 AACATC 145095 >seq3840 Length=90666 Score = 104 bits (114), Expect = 4e-16 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || |||| |||||| || || |||||||| || || ||||| Sbjct 35290 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 35349 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| | ||| || || | ||||| | |||| || | Sbjct 35350 GGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAG 35409 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||| ||||| ||||||||| | ||||| | || | || |||||||| || Sbjct 35410 CCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGTCGTAGATCCC 35469 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || ||| | |||||||| | || ||||| || | ||| | | | || Sbjct 35470 ATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAGCGTTGGGTGT 35529 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || || |||| ||||| |||| ||| Sbjct 35530 TCCAGCGCTGAACAGCGTAGGCGACGC 35556 >seq5130 Length=76842 Score = 91.5 bits (100), Expect = 2e-12 Identities = 150/211 (71%), Gaps = 14/211 (7%) Strand=Plus/Plus Query 429509 GCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACC-GGCGACCCCGTGGTCATGA 429567 ||||||| |||| |||| |||||||| ||| | || | || || | | || | | Sbjct 19339 GCTCCAGCTCGGCTGGATTGTCGAGCGACACAT-CGTAGATGGAGATTACATCATCTTCA 19397 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCT----CAACCA--CAAGGTGGTGCCCA 429621 | || ||||||||||| |||| || ||| ||| | || | | |||||| |||| Sbjct 19398 ATCGACAGCCGTCGCTGCACAAGGAGTCCATGATGGGTCATCGAGTCAAGGTCATGCCT- 19456 Query 429622 TGCCCGGTCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTG 429681 | | | ||||||||| | || || | || || | |||||||||||||||| Sbjct 19457 TACTC-----CACCTTCCGCATGAATCTCTCAGTCACATCGCCATACAACGCCGACTTTG 19511 Query 429682 ACGGCGACGAGATGAACCTGCACGTGCCCCA 429712 ||||||||||||||||| ||||||||||||| Sbjct 19512 ACGGCGACGAGATGAACTTGCACGTGCCCCA 19542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915512947401905