Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1789 116 2e-21 seq1447 86.0 4e-12 >seq1789 Length=118145 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| || |||| | || || |||||||| |||||||| Sbjct 19523 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 19582 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||| || |||||| | || | ||||||||||| | || || |||||| Sbjct 19583 GATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTT 19642 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | ||| || ||||| || ||||| ||||| || Sbjct 19643 GTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGAC 19702 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 19703 GAAGATCTGCAT 19714 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||||||||| ||||| ||| ||||| |||| Sbjct 19730 CAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATC 19789 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| |||||||| || || ||||||||| | || | ||||||||||| Sbjct 19790 CTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTC 19849 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || || || || | ||||| || || ||| || |||| ||| | Sbjct 19850 TTGGATCTTGCTCTTCAC--AT--TGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGA 19905 Query 34941 TGGTCTTTCCCGT 34953 |||||||||| || Sbjct 19906 TGGTCTTTCCAGT 19918 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | || |||| ||| | ||||||||||||||||||||| || || || Sbjct 19259 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 19318 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | || | || || || ||||| ||||||||||| || || || || || | || Sbjct 19319 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 19378 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || || || ||| | || | || | ||| || Sbjct 19379 GATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 19438 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 19439 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 >seq1447 Length=163572 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 34782 TGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841 ||| | ||||||| ||||| ||||| | | || |||| || ||||||||||||| Sbjct 89035 TGCGCACCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGG 89094 Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901 ||||||||| ||| || ||||| | || | |||||||| || | || || |||| Sbjct 89095 CGAAGATCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGA 89154 Query 34902 CGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 || | || | || | ||| || || | ||| || ||||| ||||||||||||| Sbjct 89155 CGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCT 89214 Query 34962 TTACAAA 34968 | || || Sbjct 89215 TCACGAA 89221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325665431118005