Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3840 217 1e-51 seq1789 89.7 5e-13 >seq3840 Length=90666 Score = 217 bits (240), Expect = 1e-51 Identities = 635/964 (66%), Gaps = 23/964 (2%) Strand=Plus/Plus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515 || ||||| ||| || || ||||| ||||| ||| || | | |||||| | || Sbjct 34804 CAGGGCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAAT 34863 Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575 |||| ||| || ||| || ||| |||||| || | ||| ||||| || | || Sbjct 34864 CTCGGTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTT 34923 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--- 147632 | ||||| ||| |||| ||||| || ||||||||| ||| | || | ||| Sbjct 34924 GGCAGCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGC 34983 Query 147633 AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCG 147692 | ||| || | ||| || || || || ||| |||||| ||||| || Sbjct 34984 ATACCAGAGC---TTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCG 35040 Query 147693 CTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGG 147752 |||||||| | ||| ||||| |||||||| ||| || || ||||| |||| || || Sbjct 35041 CTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGG 35100 Query 147753 ACACATCAGCGACCACATG-TCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCC 147811 ||||||| | ||| || | | || | ||| || ||| || ||||| || |||| Sbjct 35101 GCACATCAAAGTCCAGGTGGTATTTTGC-TCAACACGCTTCATGAAGAGATCTGGGACCC 35159 Query 147812 ACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTC-- 147867 |||| |||| | |||||||| || | | |||| | || || | | || | Sbjct 35160 ACAGACCGTAGAACAGATCGCGAGCA---CGAACCTCCTCCTTTCCGTGGTTC-TTGCGG 35215 Query 147868 AAATT-AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC 147926 | || ||| | | | ||| || |||||||| || || ||||| | ||| | ||||| Sbjct 35216 AGATCCAAGAAGGAGA-AGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACC 35274 Query 147927 TTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCAT 147983 ||||| |||||||||||||| | ||| | ||||||||||||| |||| ||| Sbjct 35275 AGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCAT 35334 Query 147984 GGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCA 148042 |||| | || ||| | | || ||||||||| |||| | |||| ||| || || | Sbjct 35335 GGGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCT-CCGGTTGCGCGAA 35393 Query 148043 CTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCA 148102 | ||| ||||| | |||||||| ||| ||| ||| || || ||||| | Sbjct 35394 TTCTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTA 35453 Query 148103 ATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACA 148162 |||| |||||| || || |||||||| | ||| | | | | | || || || || Sbjct 35454 ATGTGTCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCA 35513 Query 148163 TTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTT 148222 ||| | | | ||||| || ||| || || || ||| || || || | || | Sbjct 35514 GTTGAGCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGT 35573 Query 148223 GACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCG 148282 ||| | || |||||||| ||| |||||||| |||||||| ||||| | | Sbjct 35574 TCGACATGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACGG 35633 Query 148283 CGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGAT 148342 | || ||||||| ||| || ||||||| |||||||| | ||||||| | | ||| | Sbjct 35634 CCACACGCATGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGATCCTCAAAAGGT 35693 Query 148343 ATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGA 148402 || | || || || ||| | |||||||| | ||| | || || | |||||| ||| Sbjct 35694 ATGACCTCTCCAGCGTCTTGAATCCAAAGTATTGGTAGTTGAAGTCACGGTCGTAAACGA 35753 Query 148403 TGGC 148406 |||| Sbjct 35754 TGGC 35757 >seq1789 Length=118145 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||||| || | | ||||| || ||||||||||||||||| | ||| Sbjct 19721 ACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGT 19780 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || || | |||| |||||||| || |||||||| ||||| Sbjct 19781 GCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCC 19840 Query 132022 TTCTTTATC 132030 || || || Sbjct 19841 CTCCTTGTC 19849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570122072200