Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1700 235 8e-56 seq4813 138 2e-26 seq3840 105 1e-16 >seq1700 Length=96718 Score = 235 bits (260), Expect = 8e-56 Identities = 369/517 (71%), Gaps = 32/517 (6%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||||||||| ||||||||||||||| |||| | Sbjct 70026 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATCGATC 69968 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATT 1455885 || | || |||| ||||| | ||| | | ||||||||||||| | Sbjct 69967 TCTCCAAGGATCTTCACG----ACTGGAACAAGCGTCTC--AACGACGACGAGCGCTTCT 69914 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| |||||||| ||||| || ||| || ||||||||||| ||||||||| Sbjct 69913 TCATCTCCCACGTCCTGGCCTTCTT-CGCTGCTTCGGATGGCATCGTCAACGAGAACCTC 69855 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 || ||||| | ||| || ||| | || ||||| || | || ||||| |||||| Sbjct 69854 ATCGAGCGCTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 69795 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || || ||||| ||||| |||||||| ||| ||| Sbjct 69794 ATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGC 69735 Query 1456066 GACCCGGTCGAG--AAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGG 1456122 || || | || | | || ||||||| ||||||||||| | || | | | Sbjct 69734 GAGCC---CAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGT 69678 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| ||||||||| || |||||| | ||||| | ||| || ||||||| Sbjct 69677 AAGAAGGCTGACTGGGCGCTGCGGTGGATCTCCGACAAGAA----CTCCAC-CTTTGCCT 69623 Query 1456180 AGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 || ||| ||| |||||||| | | ||||| ||||| ||||| || |||| | | Sbjct 69622 GCCGTCTCATCGCCTTTGCCGCCATTGAGGGTATCTTCTTCTCCGGATCTTTCGCATCGA 69563 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| ||| | |||||||| || ||||||||||| || Sbjct 69562 TCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCT 69526 Score = 154 bits (170), Expect = 2e-31 Identities = 234/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||| | | | ||| ||||||||| || | | | | Sbjct 69487 TGCACACCGACTTTGCCTGCCTGCTGTTCTCTCACCTCAACAACAAGCCATCAAACCAAG 69428 Query 1456512 T-GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | ||| | |||||| |||||| |||| |||||| | ||||| ||| || | Sbjct 69427 TCGTTGAAG-ACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCC 69369 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || |||||| |||| |||||||||| |||||||||||| ||||| | | || | Sbjct 69368 CTCCCATGTGCGCTCCTCGGAATGAACGCCA-AGCTCATGTGCCAATACATCG-AGTTCG 69311 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 |||||||||| || ||| ||| |||||| | ||||||||||| | ||||||| Sbjct 69310 TCGCCGACCGTCTCCTCCTGGCACTCGGCAAC-CAGAAGCACTACAACGCTACCAACCCC 69252 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT- 1456749 ||| | |||||| ||||| |||| |||||||||||||| |||||| || || Sbjct 69251 TTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTC 69192 Query 1456750 GGCGAGTACGCCAAGGCCGGCGTCA 1456774 || || ||| |||||||| |||| Sbjct 69191 GGTGATTACCAAAAGGCCGGTGTCA 69167 >seq4813 Length=139967 Score = 138 bits (152), Expect = 2e-26 Identities = 175/236 (74%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 724908 TTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAG 724967 || |||| || || ||||||||||| ||||| |||| | ||| |||||| Sbjct 22429 TTCATCTCCA--GTCCTCAAGCAGGTCCACCCTGACACCGGT-----ATC-TCCAACCGT 22378 Query 724968 TCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027 ||||||| ||| ||||||| || ||||||||||| |||| ||| ||| |||||||| Sbjct 22377 GCCATGTCCATCCTGAACTCTTTCGTCAACGACATCTTCGAGCGCGTCGCAACCGAGGCA 22318 Query 725028 GGTCGCCTGGCGCGC-TCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 ||||| ||| | ||||||| ||||||| | ||||||| ||||||||| | Sbjct 22317 TCCAAGCTGGC-CGCATACAACAAGAAGTCCACGATCTCCTCGCGCGAAATCCAGACCTC 22259 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || ||| | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 22258 CGTCCGACTCATCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 22203 >seq3840 Length=90666 Score = 105 bits (116), Expect = 1e-16 Identities = 205/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | ||||||| | ||| ||||| ||| |||| ||||| || | || Sbjct 35592 ACCTACAACTACATGTCGAACAAGTACTTCACACATGCGTCGCCTACGCTGTTCAGCGCT 35533 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | | || | || ||||| || | |||||||| | || || Sbjct 35532 GGAACACCCAACGCTCAACTGGCATCCTGCTTCCTCATCGACATGAAAGATGACAGCATT 35473 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| ||||| | ||| ||||| | ||||||||| ||||| ||||| Sbjct 35472 GATGGGATCTACGACACATTAAAGACCTGCGCCATGATCTCCAAGAACGCCGGAGGCATT 35413 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || |||| | ||||| | || || ||| | ||||||||||| Sbjct 35412 GGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGGCACCAACGGAACA 35353 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| || || |||||||| || || |||||| |||| || ||||||||||||||| Sbjct 35352 TCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAG 35293 Query 260183 TGC 260185 || Sbjct 35292 GGC 35290 Score = 100 bits (110), Expect = 4e-15 Identities = 354/544 (65%), Gaps = 12/544 (2%) Strand=Plus/Minus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGTTGC 262936 ||||||||||| |||||| ||| | | || | ||||||| | ||||||||| | | Sbjct 34420 CTGGGACTGGGCCGCACTCAAGGCCAAGAT-CGCCGAGCATGGTGTCCGCAACTCGCTCC 34362 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 |||| || | |||||| || || | || ||||||||| ||||| || |||| |||| Sbjct 34361 TCGTCGCTCCCATGCCAACTGCGTCCACCTCGCAGATCATGGGCTTCAACGAGTGTTTCG 34302 Query 262997 AGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 || ||| ||| |||||||||||| | || || |||||| | || || || || ||| Sbjct 34301 AGC-CATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAGTTCCAGGTTGTC 34243 Query 263056 AACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGAC 263115 |||| || | ||| | |||| | ||| ||||| ||| | | || | || Sbjct 34242 AACCCGTGGTTGCTGAAGGACTTGGTCGAGCGTGGCCTCTGGTCAGACAACATGAAGAAC 34183 Query 263116 CGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGAT 263175 || |||| || | || || | ||| || || | | | | || || Sbjct 34182 CGCATCATCGCCGATGGTGGTTCCATCCAGCGCATT--CCA----AACATCCCCGATGAC 34129 Query 263176 CTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCG 263235 ||||||||||| | ||||||||| |||||| | | | || | | || | ||| | Sbjct 34128 CTCAAGGCTCTGTACAAGACCGTCTGGGAGATCAGCCAGCGCCACATCGTTCAGATGTCC 34069 Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295 || ||||| | | | |||| ||| ||| || ||| | || | || || Sbjct 34068 GCTGACCGTGGTGCTTTCATCGATCAGTCTCAGAGCCTGAACATCCACATGAAGGAGCCC 34009 Query 263296 ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 || | | ||||| |||||| | | ||| | |||||| ||||||||| Sbjct 34008 ACCATGGGCAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGCCTGAAGACTGGC 33949 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACG-CCATTCAATTCACCGTCGATCAGGC 263414 |||||||| || |||||| | | || | | || ||||||| ||||||||||| |||| Sbjct 33948 ATGTACTACCTTCGCACCATGGCGGC-GTCTGCGCCCATTCAGTTCACCGTCGACCAGGA 33890 Query 263415 GATG 263418 |||| Sbjct 33889 GATG 33886 Score = 91.5 bits (100), Expect = 2e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | ||||||||| || || ||||| |||||| Sbjct 34994 AGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGTACCCCATACATCCTCTACA 34935 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||||| | |||| | ||||||||| ||||| |||| |||| | ||| |||| Sbjct 34934 AGGACGCTGCCAACAGCAAGAGCAACCAGAAGAACTTGGGAACCATCCGCAG-CTCCAAT 34876 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || ||||||||||| || ||| Sbjct 34875 CTCTGCACCGAGATTATCGAGT 34854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177146164576990