Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1700 116 5e-21 seq3840 93.3 5e-14 >seq1700 Length=96718 Score = 116 bits (128), Expect = 5e-21 Identities = 280/421 (67%), Gaps = 16/421 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 69184 TAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 69243 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | ||||| | ||| || || | | ||||| Sbjct 69244 AAGTCGAAGGGGTTGGTAGCGTTGTAGTGCTTCTGGTTG-----CCGAGTGCCAGGAGGA 69298 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 |||| || | || |||| ||||| | | |||| || | |||||| |||| ||| Sbjct 69299 GACGGTCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCG 69358 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||||||||| ||||| || |||| | | ||| || | || ||||| | | |||| Sbjct 69359 CACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGT 69418 Query 122606 CGTGGATAGTTTCGGTAG-TGGGTC--TATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | | | || | | | ||| | | || | || ||| ||| ||||| Sbjct 69419 CTTCAACGACTTGGTTTGATGGCTTGTTGTTGAGGTGAGA---GAACAGCAGGCAGGCAA 69475 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | ||||| || ||||| || || || || |||||| || || |||| Sbjct 69476 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 69535 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||||||||| | || | ||| || ||||||||||||||||||| Sbjct 69536 TGAGACCACGCTTCTTCAACCAGAAGATCGATGCGAAAGATCCGGAGAAGAAGATACCCT 69595 Query 122783 C 122783 | Sbjct 69596 C 69596 >seq3840 Length=90666 Score = 93.3 bits (102), Expect = 5e-14 Identities = 548/866 (63%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||||| ||||| | ||||| || || ||| || | | |||||||| | | Sbjct 34802 GGCAGGGCGAGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATA 34861 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||||| || || || ||||| ||||| ||||| ||||| || Sbjct 34862 ATCTCGGTGCAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTG 34921 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || ||||||||||| ||||| || || || ||||| || || | | ||| || Sbjct 34922 TTGGCAGCGTCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATG 34981 Query 111410 GCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACT 111467 || | ||| | | || | || | || | | | ||| | ||||| |||||| Sbjct 34982 GCATACCAGAGCTTCTG-AGCGCGGACGGTCTC-ACGACCCTTGCCCTCACGCTCGTATC 35039 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 111527 ||| || | || ||||| | || | || | ||||| || || || | Sbjct 35040 GCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAG 35099 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | | || ||| | || |||||| ||||||||||| || ||||| | || Sbjct 35100 GGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCC 35159 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | || ||||| | | ||| |||| || | || ||||| || | | Sbjct 35160 ACAGACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGAT 35219 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATC 111701 | | ||| | || ||| |||||||||||||| | || | || | || || Sbjct 35220 CCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTC 35279 Query 111702 CCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 ||| | | ||||| || | || ||||| || ||| |||||| || || ||||| Sbjct 35280 GCTTGTTGCCGCCC----TGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATG 35335 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 || | | ||| | ||| || || || || | || | | | || | | Sbjct 35336 GGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATT 35395 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAA 111878 |||| || | |||||| || || || ||| ||||| | ||||| || ||| Sbjct 35396 CTGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCA-GGTCTTTAA 35454 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 || | ||||| || | || ||| || || || |||| |||||||| | || Sbjct 35455 -TGTGTCGTAGATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCA 35513 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 111997 || | | ||||| ||||| |||| || || || | || || |||| ||| | Sbjct 35514 GTTGAGCGTTGGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAA-GTACTTG 35572 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | ||||| | || ||| ||||| | | | || || ||||| || ||||||||||||| Sbjct 35573 TTCGACATGTAGTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACG 35632 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 || || ||||||| ||| | ||||| Sbjct 35633 GCCACACGCATGATCATCTGTTGTGG 35658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977871492000