Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1447 147 7e-30 seq1789 118 3e-21 seq2579 95.1 4e-14 >seq1447 Length=163572 Score = 147 bits (162), Expect = 7e-30 Identities = 481/743 (65%), Gaps = 11/743 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||||| ||||| || || || ||||| | | | | |||| || Sbjct 41733 GCAATCGGTATCGATTTGGGTACGACCTACTCATGTGTGGGCATCTACAGAGATGACCGC 41674 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || |||||| | ||||| || || | ||| || || ||| Sbjct 41673 ATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTCGCCTTCACC 41614 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || |||||||| ||||| || |||| || || || || Sbjct 41613 GACACCGAGCGTCTCATCGGTGATTCCGCAAAGAACCAAGTCGCCATGAACCCCGTCAAC 41554 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| || || || | ||||| ||| | || || Sbjct 41553 ACAGTCTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTC----GACGATGCTGAGGTGCA 41498 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || ||||| || | || | ||| | | |||| || || | | Sbjct 41497 GGCCGACATGAAGCACTTTCCCTTCAAGGTCAT--CAACA-AGGGTGGCAAGCCGGTCGT 41441 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || | || || || | || || || ||| || || || ||||||||||| Sbjct 41440 GCAGGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCATCAATGGT 41381 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | ||| || ||||| | |||| ||||| | | ||||| Sbjct 41380 CCTCACCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGCACAGTCAACAACGCTGT 41321 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||| ||||| || || || || | ||||| ||||| || || ||||| Sbjct 41320 CGTCACTGTCCCAGCATACTTCAACGACTCTCAGCGCCAAGCAACCAAGGACGCTGGTCT 41261 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| | || || ||||| || || || || || ||||| || Sbjct 41260 CATCGCCGGCCTGAACGTTCTGCGCATCATCAATGAGCCTACCGCCGCGGCCATTGCCTA 41201 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || ||| || || | || || || || || || ||||| Sbjct 41200 CGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGACTTGGGCGGTGG 41141 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 41140 CACCTTCGATGTCTCTCTTCTTACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACTGC 41081 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || || || ||| | ||||| || || || || || || ||||| || || || || Sbjct 41080 CGGAGACACTCATTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAA 41021 Query 349915 AGAATTTAAGCGTCAAGCTAAAA 349937 || || || || || ||||| Sbjct 41020 TGAGTTCAAACGCAAAAATAAAA 40998 >seq1789 Length=118145 Score = 118 bits (130), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || ||||| || || || Sbjct 19712 CATACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 19771 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || |||||||| ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 19772 GCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGG 19831 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || || || || ||| || ||||| || || | ||| || | | Sbjct 19832 AGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTCACATTGTCGATGGTATCCGAGGACT 19890 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| ||||| || | |||||||| || | ||| Sbjct 19891 CAACCTCAAGGGTGATGGTCTTTCCAGTCACTGT 19924 Score = 95.1 bits (104), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || || ||||| || || || || | Sbjct 19480 TTTGCATACCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGT 19539 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || ||||| || || || ||||| | || || || | Sbjct 19540 AGTCCGAGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGT 19599 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || |||| || || || || || | || || | Sbjct 19600 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAG 19659 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || || || || || || |||||||| Sbjct 19660 ACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 >seq2579 Length=129564 Score = 95.1 bits (104), Expect = 4e-14 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||| | || | ||| || | | || |||||||| | || || | || | Sbjct 66644 CCCGAGGAAGTCTCCGCCATGATTCTCGGGAAGATGAAGGAGGTCGCCGAGTCCTACCTC 66585 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || | || || | || || | ||||| |||||||| || || || || |||||| Sbjct 66584 GGAGAGAAGGTCACCAACGCAGTCGTCACTGTCCCAGCCTACTTCAACGACGCTCAGCGT 66525 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || ||||| ||| || || || | || ||||| | || |||| || Sbjct 66524 GCCGCCACCAAGGATGCCGGCGCGATCGCTGGTCTCAACGTTCTCCGCGTGGTTAACGAG 66465 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || | || || || || || || || ||| | ||| | || Sbjct 66464 CCCACCGCCGCCGCTTTGGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 66408 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | |||||||||||||| ||||| || | | || |||| |||| Sbjct 66407 ATCGTCTACGATCTCGGTGGTGGTACTTTCGATGTCTCCGTCTTGACCGTTGACCAGGGT 66348 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| | | || || ||||| || ||||| ||||| || ||||| || | Sbjct 66347 GTGTTCGAGGTTCAGTCTACCGCCGGTGACACCCATCTCGGTGGTGAGGATTTCGACCAG 66288 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 66287 CGTGTCGT 66280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515120539111685