Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq85 116 4e-21 seq3840 95.1 1e-14 >seq85 Length=589903 Score = 116 bits (128), Expect = 4e-21 Identities = 295/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || ||||||| || ||||| || || || ||| ||| | | Sbjct 245836 CCCGTACCAATACCATCAGCGCCGTTGATGAGTATCATGGGAACGATCGGGATGTACATC 245895 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | | |||||||| | ||| |||| | | | ||| | | || Sbjct 245896 TCTGGCTCGATCGTCTTTCCGTCATCAGTATTGTAGGTCAACAACGCCTCGTCGGTCTGA 245955 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | || | | | ||| || | |||| ||||||| || | |||||| || Sbjct 245956 TGGAAGAGCCTCCTGGCGAAGGGAGACAGTCTCGTGTAGATGTAACGTGCGCTGGCAGCG 246015 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || | ||||| || || | || || | || ||| ||||| | ||||| |||| Sbjct 246016 TCGCTTCCACCCTGCAATCGAGAACCGAAATTGCCGCTGGGTTCGAGAATGTTGATGTTG 246075 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | ||||| ||| ||||||||| | || || || |||||| || ||| ||| Sbjct 246076 TTTGAACCCACAAAAGTCTGAGCCAGACCAACGATAGTCTGCTGCAGTGACGTTTCTCCG 246135 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 | || || ||| || | | || | || || | || | ||||||| | ||| || Sbjct 246136 TACGAGTATGCTGTCAGCCCTGAGACCGAGCCGGCAAGCTCCACCACCTTGACGTCTTTC 246195 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 |||||||| | || ||| | ||| |||||||||||||| ||| || | ||| || Sbjct 246196 TTCAGGTTCCGCCGGAAACAAGTGTACATCACCTTGCGCTGACCTGGCTTGAGACCATCA 246255 Query 152296 ACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||||| || ||| || |||| Sbjct 246256 ACGACAGAGGGAATGGATCGCATGTTGTC 246284 >seq3840 Length=90666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || |||||||| ||||| || | |||||||||||| | Sbjct 34374 CGCAACTCGCTCCTCGTCGCTCCCATGCCAACTGCGTCCACCTCGCAGATCATGGGCTTC 34315 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | |||||||||| || || || || |||||| Sbjct 34314 AACGAGTGTTTCGAGCCATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAG 34255 Query 55604 TT 55605 || Sbjct 34254 TT 34253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168836821000