Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3840 178 1e-39 seq1789 152 6e-32 seq85 116 4e-21 seq1447 100 3e-16 >seq3840 Length=90666 Score = 178 bits (196), Expect = 1e-39 Identities = 562/862 (65%), Gaps = 17/862 (2%) Strand=Plus/Plus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || || || ||||||||||| ||||| |||| | | || |||||| || || ||| Sbjct 34811 AGAGATGCAAGGTTGCACACGGCGACCTCGTCAGGAGCAGTGTACTCGATAATCTCGGTG 34870 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | ||| || || || |||| ||| |||||||| |||| |||| |||| Sbjct 34871 CAGAGATTGGAGCTGCGGATGGTTCCCAAGTTCTTCTGGTTGCTCTTGCTGTTGGCAGCG 34930 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| ||||| ||||||||||||||| || | || ||||||||| | ||| Sbjct 34931 TCCTTGTAGAGGATGTATGGGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 34990 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGC 81143 | || | || ||| || || ||||| || | | || |||| ||| Sbjct 34991 AGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGC 35050 Query 81144 TTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 || ||||||| || |||| | |||| || | |||||||||| ||||||||||| Sbjct 35051 -TCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAA 35109 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||| ||| | | ||| ||| ||||||||| || |||| ||| || || Sbjct 35110 AGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTA 35169 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 |||||| ||||| ||| || ||||||| | || ||||| ||| | || | ||| Sbjct 35170 GAACAGATCGCGAGCA-CGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGG 35228 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGAC 81376 | || || || ||||||||||| | |||| ||| | | || | |||| Sbjct 35229 AGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAAGCACCAGGTCGCTTG---T 35285 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||| ||||||| |||||| || || || |||||| ||||||| ||| || | || || Sbjct 35286 TGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGAC 35345 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA--T 81494 | | || ||||| || || ||| | || | ||||| | || || | Sbjct 35346 CGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGT 35405 Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554 || || || ||||| || | ||| || ||| || || || | || || || Sbjct 35406 TG--AGCCCAATGCCTCCGGCGTTCTTGGAGATCATGGCGCAGGTCTTTAATGTGTCGTA 35463 Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT 81614 || || || ||||| || | ||||||||| | | ||| ||| || || |||| | | Sbjct 35464 GATCCCATCAATGCTGTCATCTTTCATGTCGATGAGGAAGCAGGATGCCAGTTGAGCGTT 35523 Query 81615 TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674 || || || ||||||| || || | ||| || |||| || ||| ||||| Sbjct 35524 GGGTGTTCCAGCGCTGAACAGCGTAGGCGACGCATGTGTGAAGTACTTGTTCGACATGTA 35583 Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 || ||||| || || || || || || ||||| || |||| || |||||||| Sbjct 35584 GTTGTAGGTCTCAATGGCGGACTCGATGTCCTCGCCGTGGATGCCGACGGCCACACGCAT 35643 Query 81735 AAACATGTACTGGGGCGTCTCG 81756 | ||| | || || ||||| Sbjct 35644 GATCATCTGTTGTGGTCTCTCG 35665 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| ||||| ||||| |||||||||| | |||||| Sbjct 33932 GTGCGAAGGTAGTACATGCCAGTCTTCAGGCCGAGCTTCCAGCCGGCGAAGTGCATGCTG 33991 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| || | | ||||| | || |||| ||||||||| |||||||||| |||| Sbjct 33992 GTGATTTTGCCCATGGTGGGCTCCTTCATGTGGATGTTCAGGCTCTGAGACTGATCGATG 34051 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 ||||| ||||| || || | ||| Sbjct 34052 AAAGCACCACGGTCAGCGGACAT 34074 >seq1789 Length=118145 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || | ||||| ||||| Sbjct 19714 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCTTCG 19655 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| |||| || |||||||||||||| ||||| |||||||| Sbjct 19654 GACACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 19595 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||||||||| | || || || | ||||| || Sbjct 19594 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCTCGGACTACAAC 19535 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | || ||||| ||||| Sbjct 19534 ATCCAGAAGGAGTCGACGCTCCATCTCGTCCTCCGCCTTCGTGGTGG 19488 Score = 145 bits (160), Expect = 9e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||||||||| |||| ||| | ||| ||||| Sbjct 19918 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 19859 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| ||||||||||||||||||||||| || || || || ||| Sbjct 19858 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGTCTCATCTTCGCGGGAAAG 19799 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| || ||||| ||| ||||| || | || ||||| |||||||| || Sbjct 19798 CAGCTTGAGGATGGGCGCACCCTCAGC-GACTACAACATTCAGAAGGAGTCCACTCTCCA 19740 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||| || || ||||| Sbjct 19739 CTTGGTGCTGCGCCTCCGTGGTGG 19716 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || |||||||||||||| || || || || |||||| Sbjct 19486 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 19427 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || ||||| ||||||||||| || || || || || Sbjct 19426 GACACAATCGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAA 19367 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | || || || Sbjct 19366 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAAC 19307 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||| || || | || | ||||| || || ||||| Sbjct 19306 ATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGACA 19257 >seq85 Length=589903 Score = 116 bits (128), Expect = 4e-21 Identities = 298/449 (66%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| |||||||| || | || || |||||||| |||||||||||||| || Sbjct 246279 CATGCGATCCATTCCCTCTGTCGTTGATGGTCTCAAGCCAGGTCAGCGCAAGGTGATGTA 246220 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | | || || | ||||||| || ||| | ||||||| | |||| | |||| || Sbjct 246219 CACTTGTTTCCGGCGGAACCTGAAGAAAGACGTCAAGGTGGTGGAGCTTGCCGGCTCGGT 246160 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || || || || |||| || |||| || ||| || || || || Sbjct 246159 CTCAGGGCTGACAGCATACTCGTACGGAGAAACGTCACTGCAGCAGACTATCGTTGGTCT 246100 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 ||||||| ||||| ||| |||| ||| | ||| | ||||| || || || ||| | Sbjct 246099 GGCTCAGACTTTTGTGGGTTCAAACAACATCAACATTCTCGAACCCAGCGG-CAATTTCG 246041 Query 32199 GACCCGGCTCGC-CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC----CCGT 32253 | | | | || ||||| | || ||||| ||| | |||||||||| ||| | || Sbjct 246040 GTTCTCGATTGCAGGGTGGAAGCGACGCTGCCAGCGCACGTTACATCTACACGAGACTGT 245981 Query 32254 CTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAAT 32313 ||| |||||| | | | | | ||| | | | | ||||| ||| || | | |||||| Sbjct 245980 CTC---CCTTCG-CCAGGAGGCTCTTCCATCAGACCGACGAGGCGTTGTTGACCTACAAT 245925 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 ||||||||| || | ||||||| | | | |||| ||| | |||| ||||| | Sbjct 245924 ACTGATGACGGAAAGACGATCGAGCCAGAGATGTACATCCCGATCGTTCCCATGATACTC 245865 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||||| || || || || || ||||| Sbjct 245864 ATCAACGGCGCTGATGGTATTGGTACGGG 245836 >seq1447 Length=163572 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || ||||||||||| || || ||||| ||||| || | ||| Sbjct 89221 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 89162 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| || || ||||| ||||||||||| || || ||||| ||||| | Sbjct 89161 GACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 89102 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||||| || || | ||| ||||| || |||| || Sbjct 89101 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTTTGAGC-GACTACAACATCCAGAA 89043 Query 27594 GG 27595 || Sbjct 89042 GG 89041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261246372400