Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1789 127 1e-24 seq5725 87.8 1e-12 >seq1789 Length=118145 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||||||||||| |||||||| ||||| |||||||| || Sbjct 19269 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGG 19328 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | |||||||| ||||| || | |||||| Sbjct 19329 CCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATACCCTCC 19388 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| | ||||||||| ||||||||| | || Sbjct 19389 TTGTCT-TGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGT 19447 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || || ||||| Sbjct 19448 GATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | |||||| || |||||| || ||||| || || || Sbjct 19488 CCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 19547 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| || ||||| || || || ||||||||||| || || Sbjct 19548 AGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 19607 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| |||||| Sbjct 19608 ATGCCCTCCTTGTCCTGGATC-TTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 19666 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| ||||| || || || | || || || || |||||||| Sbjct 19667 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||||| ||||||||| |||||| |||||||| || || || || ||| Sbjct 19725 AGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGC 19784 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| ||||| || || | |||||| Sbjct 19785 CCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCC 19844 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 19845 TTGTCTTGGATCTT 19858 >seq5725 Length=16029 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || ||||| Sbjct 12456 AGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 12397 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||||||||||| || | || ||| Sbjct 12396 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCC 12337 Query 34609 TTGTCTGT 34616 |||||||| Sbjct 12336 TTGTCTGT 12329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703152386535