Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30]
6,895 sequences; 36,104,098 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1789 161 2e-34
seq1447 123 6e-23
seq5725 98.7 2e-15
seq3840 91.5 3e-13
>seq1789
Length=118145
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || || ||||| || |||||||| || |||| || ||
Sbjct 19493 ACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 19552
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || || |||||||| |||||||| | || |||||||| || |||| ||
Sbjct 19553 GCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCC 19612
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||||||||| || || ||||| |
Sbjct 19613 CTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAA 19672
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||| || ||||||||||| || || | ||||||
Sbjct 19673 GGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||||||||| || || ||||| || || ||||| | |||||
Sbjct 19731 AGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGCCCATCC 19790
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || ||||| ||||||| || ||||||||
Sbjct 19791 TCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 19850
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||| || ||| |||||||| || ||||| |||
Sbjct 19851 TGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTC 19910
Query 211083 TTTCCCGT 211090
||||| ||
Sbjct 19911 TTTCCAGT 19918
Score = 140 bits (154), Expect = 8e-28
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| || ||| ||| || || ||||| ||||| | |||
Sbjct 19262 TCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAG 19321
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|||| || || || ||||||||||| |||||||| ||||| ||||| || || || |
Sbjct 19322 TGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGAT 19381
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| |||||||| || ||||| |||||||| ||||| ||||| || || || ||
Sbjct 19382 ACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTC 19441
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| ||||| || ||||| ||||| || || | |||||
Sbjct 19442 GAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486
>seq1447
Length=163572
Score = 123 bits (136), Expect = 6e-23
Identities = 137/180 (76%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985
|| |||||||| || || | ||| | || ||||| || || ||||| || ||||||||
Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGG-CCATCCTCGAGTTGCTTTCCGGCGAAGAT 89101
Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045
| || |||||||| || || | ||| ||||| ||||||||||| || ||||| ||
Sbjct 89102 CAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTC 89161
Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||||||| || || |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct 89162 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 89221
>seq5725
Length=16029
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| || || | ||||| | || ||
Sbjct 12450 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 12391
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| ||||| |||||||| || |||| |||||||||||
Sbjct 12390 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTC 12332
>seq3840
Length=90666
Score = 91.5 bits (100), Expect = 3e-13
Identities = 178/262 (68%), Gaps = 6/262 (2%)
Strand=Plus/Plus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCA---TCTTTGTACGCAATGAAGG 178142
|||| |||||||| ||||||||||| ||| ||||| || ||||| ||| | |
Sbjct 34893 TTCCCAAGTTCTTCTGGTTGCTCTTGCTGT---TGGCAGCGTCCTTGTAGAGGATGTATG 34949
Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202
| | || ||| | ||||||| |||| ||| || ||| |||| ||| || ||||| |
Sbjct 34950 GGGTACCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGAGCGCGGACGG 35009
Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262
||| | || || ||| |||||| | ||| ||||||||||| || | || |
Sbjct 35010 TCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGT 35069
Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322
|||||||| | |||||||| ||| | ||||| | | | |||| | || ||
Sbjct 35070 AGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCT 35129
Query 178323 TCACTCGTTTCATGAAGAGGTC 178344
|| || ||||||||||| ||
Sbjct 35130 CAACACGCTTCATGAAGAGATC 35151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159049597976675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |