Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1789 136 9e-27 seq1447 116 9e-21 seq5725 91.5 4e-13 >seq1789 Length=118145 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | |||||||||||| || || || | ||||| ||| | || Sbjct 19721 ACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGT 19780 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 19781 GCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCC 19840 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||||||| |||||||| || |||| || || || | Sbjct 19841 CTCCTTGTCTTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAG 19900 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 19901 GGTGATGGTCTTTCCAGTCA 19920 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||| || || || || |||| ||||| || | | || Sbjct 19493 ACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 19552 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || |||||||| | ||| |||||||| || ||||| || Sbjct 19553 GCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCC 19612 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || || Sbjct 19613 CTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAA 19672 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| || | ||| | ||||| Sbjct 19673 GGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||| || || || | |||||||| | | || | || || Sbjct 19275 AGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCC 19334 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| || || || ||||| ||||||||| Sbjct 19335 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATACCCTCCTTGTCT 19394 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| |||||||| | ||||| || | ||||| ||| Sbjct 19395 TGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTC 19454 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 19455 TTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 >seq1447 Length=163572 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| |||||||| ||||| || || ||||| || |||||||| Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 89102 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| || || || || ||||| || |||||||| ||| || ||| Sbjct 89103 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCG 89162 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| || | ||||| || | ||||| ||||||||||| Sbjct 89163 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 89206 >seq5725 Length=16029 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| |||| | |||| || || Sbjct 12450 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 12391 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC- 225620 || |||||||| || |||||||| || || |||||||| || ||||| ||||||||||| Sbjct 12390 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCT 12331 Query 225621 -TTGGAT 225626 |||||| Sbjct 12330 GTTGGAT 12324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192425849185130