Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5820 111 1e-19 >seq5820 Length=46620 Score = 111 bits (122), Expect = 1e-19 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||||| ||||||||||||| |||||| || || ||||| || |||| ||||||||||| Sbjct 17876 GTACTCGGCTCCGAAATGCCGCCATTGAAAGCCATACACAGGACCCAAATCTCCCTCTTC 17817 Query 27558 CCTGTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 ||||| || ||| || | ||||||| | ||||| || || || |||||||||| | Sbjct 17816 TCTGTG-TCCAAGTCCTACGCTGTCCAAGTATTCTCTTGAGCCATTTCCGTCCCAGATAT 17758 Query 27617 TTACCCCCT--TCTCGGAG-AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 27673 || || ||| | || ||| |||| ||| || || || || ||||||| || Sbjct 17757 GCACGTTCTGGTCTTGTAGCAGC---TTGGCGTTGGTTGAGCCGGCCACAAACCACAACA 17701 Query 27674 GCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||| | | ||| || || | ||||| | |||||| |||||||| |||| Sbjct 17700 GCTCGGCGAGGACAGC--TCGTAGGAAGACTCGCTTGGTGGTGAGGAGTGGAA 17650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369476149270745