Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20brevis_20[genbank_20GCA_5F000983655.1_202015-04-30] 6,895 sequences; 36,104,098 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1789 196 1e-44 seq1447 132 1e-25 seq1700 111 3e-19 seq5725 87.8 4e-12 >seq1789 Length=118145 Score = 196 bits (216), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 19487 ACCACCACGAAGGCGGAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 19546 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| ||||| || ||||| |||||||| || |||||||| || Sbjct 19547 GAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGG 19606 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| || || Sbjct 19607 AATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 19666 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | |||||| ||||| |||||||| Sbjct 19667 CTCCAAGGTGATCGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19714 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| || | ||||| || || || |||||||| |||| | Sbjct 19260 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 19319 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| ||||| | || ||||| || || Sbjct 19320 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 19379 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| | || ||| | ||||| ||||| || | || ||| Sbjct 19380 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 19439 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 19440 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 19486 Score = 127 bits (140), Expect = 4e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || || ||||||||||| Sbjct 19715 ACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGCT 19774 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || ||||| | ||| || ||||| || Sbjct 19775 GAGGGTGCGCCCATCCTCAAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCTGGAGG 19834 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||||||||||||| ||||| || || | ||||| || ||||| | || | Sbjct 19835 AATGCCCTCCTTGTCTTGGATC-TTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAA 19893 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | || || ||||| ||||| || |||| Sbjct 19894 CCTCAAGGGTGATGGTCTTTCCAGTCA 19920 >seq1447 Length=163572 Score = 132 bits (146), Expect = 1e-25 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || ||||||||||| ||||| || ||||| |||||| Sbjct 89043 TTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 89102 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 || || |||||||| || || |||||||| || |||||| ||||| || ||| | || Sbjct 89103 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATC-TTGCTCTTGACGTTGTC 89161 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| || | || || ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 89162 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 89221 >seq1700 Length=96718 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||| ||||| || | |||||| | ||||| ||||| ||||| || || ||| | || Sbjct 69352 TCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTCCTCC 69293 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 |||| || || || |||| || ||| | | |||||||||| || |||||| || Sbjct 69292 TGGCACTCGGCAACCAGAAGCACTACAACGCTACCAACCCCTTCGACTTCATGGAGAACA 69233 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || ||| || || || ||||||||||| ||||||||| | ||||| |||| | ||| Sbjct 69232 TCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGATTACCAAAAGGCCG 69173 Query 230407 GTGT 230410 |||| Sbjct 69172 GTGT 69169 >seq5725 Length=16029 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 12465 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 12406 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| ||||||| || |||||||| ||| Sbjct 12405 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 12346 Query 282993 ATACCCTCCTTGTC--TTGGAT 283012 || || |||||||| |||||| Sbjct 12345 ATGCCTTCCTTGTCTGTTGGAT 12324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046646728769330