Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3272 147 2e-30 >seq3272 Length=75414 Score = 147 bits (162), Expect = 2e-30 Identities = 469/722 (65%), Gaps = 4/722 (1%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | || || || ||||| ||||| || ||||| | ||||| || |||| Sbjct 16185 TTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCT 16244 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 |||||||||| || || || || || | | | || | || || ||| | || Sbjct 16245 CCATGAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTG-GTTGCCGAGTGCCAGGAGG 16303 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | ||| || || || || || ||||||||||| | | | ||||||||| | || Sbjct 16304 AGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAG- 16362 Query 16853 CGTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || || || || || || | || ||||| || || || || || | || || Sbjct 16363 CGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGAT 16422 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 |||| || | || || | | || ||||| |||| ||| || || || Sbjct 16423 GTCTTCAACCACTTGGTTTGATGGCTTGTTGTTGAGATGAGAGAACAGCAGGCAGGCAAA 16482 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| || | ||||| || | | || || ||||| || || || | || ||||| Sbjct 16483 GTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCAT 16542 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || || ||||| ||||| || |||| ||||| || || || ||||| || || || Sbjct 16543 GAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGATGCCTTC 16602 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || || ||||| ||||| | || ||| | || | || |||| |||||| Sbjct 16603 GATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGATCCATCG 16662 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 | || |||| || || || | ||||| || | || ||||| || || | | Sbjct 16663 CAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGAGGTA 16722 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 | || || | ||| | || || || |||||||| ||| ||| | |||||||| Sbjct 16723 CGTGCGTTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGAGTG 16782 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||||||||| ||||| || ||||| ||||| ||||| || | ||||| ||||| Sbjct 16783 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATTTGCACTTC 16842 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| || || || || ||||| |||||||| || || ||||| || || Sbjct 16843 TCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCAGCGAAGAAGGC 16902 Query 17392 CA 17393 || Sbjct 16903 CA 16904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517523733698400