Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2317 114 1e-20 seq2215 84.2 2e-11 >seq2317 Length=245020 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | |||||||| |||| ||| |||||| |||||||| ||||| | Sbjct 71201 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGA 71260 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || ||| || ||||||| ||||| ||||| || | || || | ||| |||||| || Sbjct 71261 AAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 71320 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| ||||| | | ||| || || | |||| Sbjct 71321 GATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 71380 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || || ||||||||||| | || ||||| || |||||||| Sbjct 71381 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| |||||||| ||||| | Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| || | || | || ||| ||||| ||| Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 71550 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACC 71609 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || |||||||| || | || ||||| || || ||||| Sbjct 71610 TCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | |||||||||||| || ||||| ||||| Sbjct 71658 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 71717 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| || || ||||| || | || || | ||||||||| || Sbjct 71718 AGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 71777 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | ||| ||||| || ||| Sbjct 71778 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 71837 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||| || || Sbjct 71838 TCAAGGGTGATGGTCTTTCCAGT 71860 >seq2215 Length=151005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || ||||| ||||| | Sbjct 66702 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 66761 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||| ||||| ||||| || | || || | ||| |||||| || Sbjct 66762 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 66821 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 66822 ATGCCTTCCTTGTC 66835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422241805560080