Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3272 369 4e-97 seq2317 129 6e-25 seq864 114 1e-20 seq2215 95.1 1e-14 >seq3272 Length=75414 Score = 369 bits (408), Expect = 4e-97 Identities = 578/811 (71%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || || ||||| | ||||||| | || || Sbjct 17031 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATCTC 16972 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | |||| |||||||| |||||||| |||||| Sbjct 16971 TCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGCGCTTCTTCATCTCC 16912 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||| ||||| || || ||||||||||||||||| || ||||||| Sbjct 16911 CACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCGC 16852 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || || |||| | ||||||| || |||||||||||||| |||||| || Sbjct 16851 TTCAGCGGAGAAG-TGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 16793 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | ||||| || | || || |||||||||||| ||| | || | | Sbjct 16792 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAA 16733 Query 116932 GGAGAAGCTCCGT--TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | | | || ||| | || ||||||||||| | || || ||| || ||||||| Sbjct 16732 GCA-ACGC-ACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCT 16675 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||||||||| |||||| ||| || | || |||| | | || || | ||| Sbjct 16674 GACTGGGCGCTGCGATGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCC 16615 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||| |||| ||| ||||||| || || |||||| | || || ||| | ||| Sbjct 16614 TTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTGGTTGAAG 16555 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||| ||||| |||||| |||||||||||| ||| | || ||||| Sbjct 16554 AAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTGATGAGGGC 16495 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| |||||||||||| |||||||| ||| | || | | | | | | Sbjct 16494 ATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCT-CAACAACAAGCCATCAAACCA 16436 Query 117230 CG-CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || || ||| ||||||| || |||| |||||||||| |||||||| || || Sbjct 16435 AGTGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGC 16376 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || ||||| || || ||| | || || || | |||| ||||||||||||||| Sbjct 16375 CCTCCCATGTGCG-CTCCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACATCGAGTTC 16318 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 |||||||| | || || || | || | | | |||||||||||| | ||||||| Sbjct 16317 GTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACCAACCCC 16258 Query 117407 CTGGACTTTATGAACCTCATCTC-CTTGGAG 117436 | || || ||| | |||||| || |||| Sbjct 16257 TTCGATTTCATGGAGAACATCTCTCTCGGAG 16227 >seq2317 Length=245020 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| | || || || | | Sbjct 71656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 71597 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| ||| | ||||| Sbjct 71596 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 71537 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| || || || |||| ||||| ||| |||||||||| Sbjct 71536 CAGCGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACGCTCTCCGACTACAAC 71477 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||||||| ||||| || Sbjct 71476 ATTCAGAAGGAGTCCACGCTTCATCTCGT 71448 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| || ||||||| ||| ||||| || || || Sbjct 71791 GACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAACTTGAG 71732 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||||| |||||||||||||||||||||| |||| || || | ||| | Sbjct 71731 GATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTC 71672 Query 40903 CGC 40905 ||| Sbjct 71671 CGC 71669 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || ||||| |||| || || | | Sbjct 71428 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 71369 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | ||||| ||||| ||||| ||||||| Sbjct 71368 GACACAATCGACAACG-TGAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 71310 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || |||| || || || |||||||| Sbjct 71309 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTTTCTGACTACAA 71250 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 71249 CATTCAGAAGGAGAGCACCCTGCA 71226 >seq864 Length=88037 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || |||||| |||| || || | |||||| | | Sbjct 47666 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 47607 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || |||| || || ||||| ||||| ||||||| || ||| | Sbjct 47606 GACAACG-TCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATT 47548 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || || || || || | || || |||| |||||||||||||||||| Sbjct 47547 GATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTCTCAGCGACTACAACATCCAGAA 47488 Query 40878 GG 40879 || Sbjct 47487 GG 47486 >seq2215 Length=151005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || ||||||| || || || |||| ||| ||||| ||||| || Sbjct 66835 GACAAGGAAGGCATTCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 66776 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || |||||| |||||||||||||||||||||| | || || || Sbjct 66775 GACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 66726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515197431988800