Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2317 118 9e-22 seq2215 84.2 2e-11 >seq2317 Length=245020 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| ||||| | |||||| |||||| Sbjct 71675 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTC 71734 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || ||| ||||||| |||||||| || ||||| |||||||||||||| Sbjct 71735 AAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 71794 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| |||| | ||| ||||| | ||| | || || Sbjct 71795 GATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTT 71854 Query 118709 GCCGGTCA 118716 || |||| Sbjct 71855 TCCAGTCA 71862 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| | ||||| ||||| || || || || Sbjct 71460 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCAAGTTGCTTGCCG 71519 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||| || || || || |||||||||||||| || || || Sbjct 71520 GCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 71579 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||| ||||| | ||| | ||| ||||| || || || Sbjct 71580 ACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTC 71639 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 71640 TTGACGAAGATCTGCAT 71656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || ||||||||||| || | || || ||||| Sbjct 71219 CACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGCGTTCGGCCGTCCTC 71278 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| ||||||| ||||| || || || || || |||||||||||| Sbjct 71279 AAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 71338 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| || |||| || | || || Sbjct 71339 GATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTCTT 71398 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || || || || ||||| Sbjct 71399 GCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 >seq2215 Length=151005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | || || |||||| Sbjct 66720 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 66779 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| || ||||| || || || || ||||| ||||||||||| Sbjct 66780 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCTGT 66838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812528898960