Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2546 372 3e-98
>seq2546
Length=134672
Score = 372 bits (412), Expect = 3e-98
Identities = 1013/1537 (66%), Gaps = 36/1537 (2%)
Strand=Plus/Plus
Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511
|||| || ||||| ||||| || | | || || || ||| |||||| ||| | |
Sbjct 38875 GGTTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATG 38934
Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571
| ||||| | || ||| |||| ||||| | ||| ||||| || ||||| || || |
Sbjct 38935 GCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCGA 38994
Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631
|| |||||||| | | || |||| | || || |||||| | ||||||||
Sbjct 38995 CGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 39054
Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691
| ||||| | || |||||| ||||||| |||||||| | | |||| | | ||
Sbjct 39055 AGAGATCAGTAGGAGTCACAC---CCCACATGTCGTATTGAAGCTCGCC-CTTGGAGACG 39110
Query 22692 GGCT-GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750
|| ||| ||||| || ||||| || ||| | || || || ||||| ||
Sbjct 39111 GGAGAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGGCAGCGAGATCGCATGAAGCGGTG 39170
Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGAC 22806
| || ||| || || ||||||||||| | |||| | | ||| || ||
Sbjct 39171 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACGGGCCTCAGGAGAG 39230
Query 22807 GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866
||| | ||||| || | || ||| || || || | ||| | || || | |||
Sbjct 39231 ----TCGAAAGGCATGCGAAGAGCCAAGAAAGCATCGGCAAGACCATTGACACCGAGACC 39286
Query 22867 GATCGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAA 22924
||| || || | | || | ||| | |||| |||| || || ||
Sbjct 39287 GATGGGACGATGACGGAAGTTG--CTCTTGCGAGCCTCTGGCACTGGGTAGTGGTTGACC 39344
Query 22925 TCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAG 22984
||||| | |||||||||| |||| || | | || | ||||||
Sbjct 39345 TCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTTTCAAAG 39404
Query 22985 TCGTAAACGCCCGAT-----TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGC 23039
||| || ||| || | ||| | ||| | || | |||| || ||||| ||||
Sbjct 39405 TCG-AAGCGCTCGTTCTCGATGT-CGACATAGGTGGGAAGAGCGAGAGATGCAAGGTTGC 39462
Query 23040 ATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACT 23099
| ||||| ||||| || | |||||||| | || ||||| || || ||| |
Sbjct 39463 ACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGC 39522
Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159
|| || |||||||| |||||||||| || | ||| | |||||||| || || |
Sbjct 39523 GGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTAAAGGATAT 39582
Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219
| |||||||| |||||| || | ||||| ||| || ||| | |||||||| | |
Sbjct 39583 ATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGAGCGCGGA 39642
Query 23220 CACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278
| ||| |||| ||| ||| || |||||| | ||||| | | || || || ||
Sbjct 39643 CG-GTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCG 39701
Query 23279 CCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTC 23337
||||| ||| || ||||| ||||| | | || ||||| | | |||| | | |
Sbjct 39702 CCGTAGACA-TCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTATT 39760
Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397
| ||||| || |||| || ||||| || | ||| ||| |||||||||| ||||| ||
Sbjct 39761 TTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGAACAGATCGCGAGC 39820
Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457
|| |||||||| || ||| |||||| | |||||| ||| || || || || ||
Sbjct 39821 ACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGAAGACATCTGCGTG 39880
Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517
||| ||||||| ||| | |||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct 39881 CCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGCCCTGGTCGACGTA 39940
Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTAC 23577
|| || |||||||| |||| | ||||| || |||||||||||||| | |||
Sbjct 39941 GCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGATGTTCCGTTGGT 40000
Query 23578 GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637
||| | | || |||| |||| |||| |||| || || ||||||||| |
Sbjct 40001 GCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAGCCCAATGCCTCCGGC 40060
Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697
|| || ||||| ||||| ||||| ||||||||||| || || || ||||| ||
Sbjct 40061 GTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCAATACTGTCATC 40120
Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757
|| | ||| | ||| || || | || || || ||||| || | || ||||||
Sbjct 40121 CTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCAGCACTGAACAG 40180
Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGG 23816
|| || || || || ||||| |||||||| ||| ||||| || || ||||| |
Sbjct 40181 CGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAG-TTGTAGGTCTCAATGGCAG 40239
Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876
||||||||||| ||||| || || | || || ||||| ||||| | ||| ||||| |
Sbjct 40240 ACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCATCTGTTGTGGTCTTT 40299
Query 23877 CG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933
|| ||| | ||| || || | || || ||||| | | || ||| || || || |
Sbjct 40300 CGGCAACCTT---GCCATTGATCCTCAAAAGGTATGACCTCTCCAGCGTCTTGAACCCGA 40356
Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970
| || | ||||| || ||||| |||| ||| |||||
Sbjct 40357 AGTATTGGTAGTTGAAATCACGGTCGTACACGATGGC 40393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445747566369600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |