Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2546 372 3e-98 >seq2546 Length=134672 Score = 372 bits (412), Expect = 3e-98 Identities = 1013/1537 (66%), Gaps = 36/1537 (2%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || ||||| ||||| || | | || || || ||| |||||| ||| | | Sbjct 38875 GGTTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATG 38934 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | ||||| | || ||| |||| ||||| | ||| ||||| || ||||| || || | Sbjct 38935 GCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCGA 38994 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631 || |||||||| | | || |||| | || || |||||| | |||||||| Sbjct 38995 CGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 39054 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||||| | || |||||| ||||||| |||||||| | | |||| | | || Sbjct 39055 AGAGATCAGTAGGAGTCACAC---CCCACATGTCGTATTGAAGCTCGCC-CTTGGAGACG 39110 Query 22692 GGCT-GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 || ||| ||||| || ||||| || ||| | || || || ||||| || Sbjct 39111 GGAGAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGGCAGCGAGATCGCATGAAGCGGTG 39170 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGAC 22806 | || ||| || || ||||||||||| | |||| | | ||| || || Sbjct 39171 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACGGGCCTCAGGAGAG 39230 Query 22807 GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 ||| | ||||| || | || ||| || || || | ||| | || || | ||| Sbjct 39231 ----TCGAAAGGCATGCGAAGAGCCAAGAAAGCATCGGCAAGACCATTGACACCGAGACC 39286 Query 22867 GATCGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAA 22924 ||| || || | | || | ||| | |||| |||| || || || Sbjct 39287 GATGGGACGATGACGGAAGTTG--CTCTTGCGAGCCTCTGGCACTGGGTAGTGGTTGACC 39344 Query 22925 TCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAG 22984 ||||| | |||||||||| |||| || | | || | |||||| Sbjct 39345 TCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTTTCAAAG 39404 Query 22985 TCGTAAACGCCCGAT-----TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGC 23039 ||| || ||| || | ||| | ||| | || | |||| || ||||| |||| Sbjct 39405 TCG-AAGCGCTCGTTCTCGATGT-CGACATAGGTGGGAAGAGCGAGAGATGCAAGGTTGC 39462 Query 23040 ATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACT 23099 | ||||| ||||| || | |||||||| | || ||||| || || ||| | Sbjct 39463 ACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGC 39522 Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159 || || |||||||| |||||||||| || | ||| | |||||||| || || | Sbjct 39523 GGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTAAAGGATAT 39582 Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219 | |||||||| |||||| || | ||||| ||| || ||| | |||||||| | | Sbjct 39583 ATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGAGCGCGGA 39642 Query 23220 CACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278 | ||| |||| ||| ||| || |||||| | ||||| | | || || || || Sbjct 39643 CG-GTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCG 39701 Query 23279 CCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTC 23337 ||||| ||| || ||||| ||||| | | || ||||| | | |||| | | | Sbjct 39702 CCGTAGACA-TCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTATT 39760 Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 | ||||| || |||| || ||||| || | ||| ||| |||||||||| ||||| || Sbjct 39761 TTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGAACAGATCGCGAGC 39820 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 || |||||||| || ||| |||||| | |||||| ||| || || || || || Sbjct 39821 ACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGAAGACATCTGCGTG 39880 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||| ||||||| ||| | |||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 39881 CCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGCCCTGGTCGACGTA 39940 Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTAC 23577 || || |||||||| |||| | ||||| || |||||||||||||| | ||| Sbjct 39941 GCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGATGTTCCGTTGGT 40000 Query 23578 GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 ||| | | || |||| |||| |||| |||| || || ||||||||| | Sbjct 40001 GCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAGCCCAATGCCTCCGGC 40060 Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 || || ||||| ||||| ||||| ||||||||||| || || || ||||| || Sbjct 40061 GTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCAATACTGTCATC 40120 Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 || | ||| | ||| || || | || || || ||||| || | || |||||| Sbjct 40121 CTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCAGCACTGAACAG 40180 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGG 23816 || || || || || ||||| |||||||| ||| ||||| || || ||||| | Sbjct 40181 CGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAG-TTGTAGGTCTCAATGGCAG 40239 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 ||||||||||| ||||| || || | || || ||||| ||||| | ||| ||||| | Sbjct 40240 ACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCATCTGTTGTGGTCTTT 40299 Query 23877 CG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933 || ||| | ||| || || | || || ||||| | | || ||| || || || | Sbjct 40300 CGGCAACCTT---GCCATTGATCCTCAAAAGGTATGACCTCTCCAGCGTCTTGAACCCGA 40356 Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 | || | ||||| || ||||| |||| ||| ||||| Sbjct 40357 AGTATTGGTAGTTGAAATCACGGTCGTACACGATGGC 40393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445747566369600