Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq958 96.9 7e-15 seq2546 91.5 3e-13 >seq958 Length=118480 Score = 96.9 bits (106), Expect = 7e-15 Identities = 173/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 35317 CAAGA--AGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGA 35374 ||||| |||| | || |||||| | | ||||| || | |||| |||||||| | Sbjct 101413 CAAGACCAGAACGTGCATATCTGGGATGGCAATGGCTCAAGAGAATACTTGGACAGCGTA 101354 Query 35375 GGG-TTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 || || || | |||| ||||||||||||||| || || || || || |||||||| || Sbjct 101353 GGACTTGGAC-ACAGAGAAGAGGGAGATTTGGGTCCTGTGTATGGCTTTCAATGGCGGCA 101295 Query 35434 TTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT 35493 ||| || || || || || ||| | | || ||||| |||||||| | |||||| | Sbjct 101294 TTTCGGAGCCGAGTACGAAGACTGCCATGCGGACTATACAGGAAAGGGCGTGGATCAACT 101235 Query 35494 GGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGC 35553 || | | || | | || |||| | |||| | ||| ||||||| ||| | | || Sbjct 101234 CGCAGAAGTGCTGAGAAAGTTGCGAGAGAGTCCATACGATCGAAGGATCATTCTCAGTGC 101175 Query 35554 ATGGAATCC 35562 |||||||| Sbjct 101174 GTGGAATCC 101166 >seq2546 Length=134672 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 ||||| || |||| ||||| || || ||| || || || || || || ||||| Sbjct 40053 CCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCAATA 40112 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || ||||| | | | | | |||||||| || | || || | || ||||||| | Sbjct 40113 CTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCAGCA 40172 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 | ||||| ||||| || ||||| || || || | |||||||| | || || ||| Sbjct 40173 CTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAGTTGTAGGTCTCA 40232 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| |||| | ||||| ||||| || || |||||||||||||| ||||| Sbjct 40233 ATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCAT 40285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989541144827900