Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2546 93.3 4e-14 >seq2546 Length=134672 Score = 93.3 bits (102), Expect = 4e-14 Identities = 260/394 (66%), Gaps = 10/394 (3%) Strand=Plus/Plus Query 154107 TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGA 154166 ||||||||||| | |||| || | | ||||| || || || |||||||||| ||| Sbjct 39921 TTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGA 39980 Query 154167 CCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT---GTTGCGGCCTCGAACGCTGTT 154222 ||| ||| || ||||| || | || | |||| |||||| |||| |||| Sbjct 39981 CCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCG----CGAATTCTGTG 40036 Query 154223 TACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTT 154282 ||||| | ||||| || ||| ||| || |||||||||||||| |||| ||||| Sbjct 40037 GACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTC 40096 Query 154283 ATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCG 154341 ||||| ||| ||| || || | ||| ||| || ||||| || || || ||| | Sbjct 40097 GTAGATCCCATCAATACTGTCATCCTTCAT-GTCGATGAGGAAGCAGGATGCCAGCTGAG 40155 Query 154342 GAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCA 154401 | || || || ||| |||| || || || || ||| | ||| | || Sbjct 40156 CGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACA 40215 Query 154402 AAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATAC 154461 | || || | || |||||| |||||||| || || ||| || | ||| | || Sbjct 40216 TGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACAC 40275 Query 154462 GCATGTGCATGTGTTGAATCCTTTCGGCAACTTT 154495 ||||| ||| ||||| ||||||||||| || Sbjct 40276 GCATGATCATCTGTTGTGGTCTTTCGGCAACCTT 40309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496043041296000