Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3272 266 5e-66 seq2546 131 2e-25 seq958 91.5 2e-13 >seq3272 Length=75414 Score = 266 bits (294), Expect = 5e-66 Identities = 596/885 (67%), Gaps = 29/885 (3%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||| | || ||| |||||||||| ||||| |||||||||||||||| | ||| ||| Sbjct 17039 ATCAACAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGA 16980 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 ||||||| ||||||||||| |||| ||| | | || ||| || ||||| | Sbjct 16979 TCGATCTCTCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGCGCTTCT 16920 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGT 125190 | || || ||| | |||||||||| || | || ||||| ||||||||||| || || Sbjct 16919 TCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCA 16860 Query 125191 TGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAA 125250 | || ||| ||| || || || |||| ||||| ||||| ||||| | Sbjct 16859 TCGAGCGCTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGA 16800 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 ||||||| |||||| | ||||| || | ||||| || || |||| ||||| ||| Sbjct 16799 TCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCG 16740 Query 125311 ATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 | || |||||| | || ||||| ||||| ||||||| | || | || |||| Sbjct 16739 AGCCCAAGCAACGCACGTAC---CTCTTCAACGCCATCGACAACATCCCATGCATCCGTA 16683 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| | | || |||||| ||| | || || | | ||| | | | Sbjct 16682 AGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTC 16623 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | | || || |||||| | || ||||||||||| || || ||| ||| | ||||| | Sbjct 16622 TCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCT 16563 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | |||||||| || |||||||| || || || | |||||| | || || || | Sbjct 16562 GGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTG 16503 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAG 125606 | |||||| | ||| ||||||||| || ||||| || || | || | | | Sbjct 16502 ATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCA--TCTCAACAACAAGCC 16445 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 || | | || | | || | ||||| | ||||| || || || || || Sbjct 16444 ATCAAACCAAGTGGTTGAA--GACATCA------TCACCGAGGCTGTCGTCATCGAGCAG 16393 Query 125667 GAGTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || || |||| || || || | | || |||||| |||||| ||||| Sbjct 16392 GAGTTCCTCACAGACGCCCTCCCATGTGCGC-TCCTCGGAATGAACGCCAAGCTCATGTG 16334 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGAT 125782 | | ||||| ||||| || || |||||||| || | | | || || ||| Sbjct 16333 CCAATACATCGAGTTCGTCGCCGATCGTCTCCT---CCTGGCACTCGGCAACCAGAAGCA 16277 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 |||||||||| || ||||| ||||||||| | ||| || || | || ||||| || Sbjct 16276 CTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAA 16217 Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTGTC 125885 ||| ||||||||| ||| | || ||| ||| || ||||||| Sbjct 16216 CTTCTTCGAGAAGCGTGTCGGTGACTACCAAAAGGC--CGGTGTC 16174 >seq2546 Length=134672 Score = 131 bits (144), Expect = 2e-25 Identities = 331/498 (66%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 |||||||||||||| || || ||||| | ||| | ||| | || || |||||||| || Sbjct 39931 CAGGGCGGCAATAAGCGACCTGGCGCCTTTGCCATGTACATCGAGCCATGGCACGCAGAT 39872 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||| | || | ||||| ||| || || |||| || || | || Sbjct 39871 GTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCTCGCGAT 39812 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || | || ||||| |||||| | ||||||||||| || | | | | | Sbjct 39811 CTGTTCTACGGTCTGTGGGTCCCAGATCTCTTCATGAAGCGTGTTGAGCAAAATACCACC 39752 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| | |||||||| || || ||||||||| | ||| || |||| ||||| Sbjct 39751 TGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTCTACGGCGCTGAGTTC 39692 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||| |||| | ||||||| |||||| | |||||||| ||| || | Sbjct 39691 GAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAGGGTCGTGAGAC-CGTCCGCGCTC- 39634 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | |||||| ||||| || || || || || || | Sbjct 39633 AGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTT 39574 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | | || |||| |||||||| | ||||| |||||| |||||| Sbjct 39573 ACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAACCATCCGCAGCTCCA 39514 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || || | |||||| | |||| || ||| || || ||| || | Sbjct 39513 ACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGGTCGCCGTGTGCAACCTTG 39454 Query 97354 CATCGGTCAATCTGCCCA 97371 |||| || ||| |||| Sbjct 39453 CATCTCTCGCTCTTCCCA 39436 >seq958 Length=118480 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 ||||| ||||||| ||| |||| || ||||| || || || ||| |||| | || || Sbjct 101343 ACAGAGAAGAGGGAGATTTGGGTCCTGTGTATGGCTTTCAATGGCGGCATTTCGGAGCCG 101284 Query 70116 AGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATC 70174 |||| | ||||||| | | |||||| | || |||| || |||||| | ||||| | Sbjct 101283 AGTACGAAGACTGCCATGCGGACTATACAGGAAAGGGCGTGGATCAACTCGCAGAAGTGC 101224 Query 70175 ATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCT 70234 || | | | ||| | |||| ||| | |||||| | | | | |||||||| Sbjct 101223 TGAGAAAGTTGCGAGAG-AGTCCATACGATCGAAGGATCATTCTCAGTGCGTGGAATCCA 101165 Query 70235 GCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC 70288 ||||| || | | ||||||||||| ||||||||| || || ||||| ||| Sbjct 101164 GCAGACATGAAGAAGATGGCACTACCGCCGTGTCACATGTTCGCCCAGTTCTAC 101111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741027890248800