Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3272 120 3e-22 seq2317 105 6e-18 seq2215 105 6e-18 >seq3272 Length=75414 Score = 120 bits (132), Expect = 3e-22 Identities = 341/516 (66%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | ||||||||| || |||||| | || | | | Sbjct 16698 ATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCC 16639 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| ||| | | |||||||| | || ||| |||| || || || | Sbjct 16638 ACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCT 16579 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || || | ||||| | | || || | || | ||||||| ||||| || || ||| Sbjct 16578 TTCGCGTCGATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCTGGCCTCACTTTCTCCAA 16520 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || || |||||| |||| || |||||||| || || || | | | Sbjct 16519 CGAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTG--CTGTT-CTC 16463 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTG--AG-CATGTTCAAGGAGGCGGT 46379 || | || |||||| | | || ||| | || ||| ||| ||||| || Sbjct 16462 TCATCTCAACAACAAGC---CATCAAACCAAGTGGTTGAAGACATCATCACCGAGGCTGT 16406 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 | ||| ||| ||||||| | || | ||| || || ||| || || || |||||||| Sbjct 16405 CGTCATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGC 16346 Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 || |||||| | ||||||||||| || || || || || ||| || || | | Sbjct 16345 CAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAA 16286 Query 46500 GCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559 | |||||| | |||| ||| || || || || ||| | |||||||| || | || Sbjct 16285 CCAGAAGCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGG 16226 Query 46560 CAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| || || || ||||| ||||| ||||| || || Sbjct 16225 CAAGACGAACTTCTTCGAGAAGCGTGTCGGTGACTA 16190 >seq2317 Length=245020 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | || |||||||| || |||||||| ||||| Sbjct 71658 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 71717 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||||| || |||||||| ||| |||| | ||||||||||| ||||| Sbjct 71718 AGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 71777 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | |||||| | Sbjct 71778 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 71837 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || || || Sbjct 71838 TCAAGGGTGATGGTCTTTCCAGT 71860 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | ||| |||||| ||||||||||| || Sbjct 71202 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAA 71261 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | ||||| |||||||| ||| Sbjct 71262 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 71321 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || || | ||||| | Sbjct 71322 ATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 71381 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| || || || ||||| || ||||| Sbjct 71382 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| ||||||||||| ||| Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || |||||||| ||| |||| || ||||| ||||| || || Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||| | Sbjct 71550 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACC 71609 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || ||||| |||||||| Sbjct 71610 TCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 >seq2215 Length=151005 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 66701 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 66760 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 66761 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 66820 Query 131127 GATTCCTTCTTTGTCGGT 131144 || ||||| ||||| || Sbjct 66821 AATGCCTTCCTTGTCTGT 66838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471992857459200