Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3272 154 2e-32 >seq3272 Length=75414 Score = 154 bits (170), Expect = 2e-32 Identities = 458/696 (66%), Gaps = 13/696 (2%) Strand=Plus/Plus Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 |||||||| || || || ||| || || ||||| || | ||| || | |||||| || || Sbjct 16349 TTCATTCCGAGGAG-CGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGAC 16407 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTA--TTTGGTGGTTT-TTGTACGACATAATT 93081 || || | | ||| ||| || ||| |||| ||| || |||| || || | Sbjct 16408 AGCCTCGGTGATGATGTCTTCAACC--ACTTGGTTTGATGGCTTGTTGTT-GAGATGAGA 16464 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 | ||| | ||| ||||||||||| || | || || || || || || | ||| ||| Sbjct 16465 GAACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGA 16524 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | || || | || || || ||||| | ||| || || || || ||| || Sbjct 16525 GAAAGTGAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCC 16584 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || ||||| | ||| ||||| || | | ||| |||||| | | | Sbjct 16585 GGAGAAGAAGATGCCTTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTT 16644 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-T 93320 || | ||||||| | ||||| || || || || || || || | |||| | Sbjct 16645 CTTGTCGGAGATCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGA-TGTTGT 16703 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| ||||| || ||||| || | | | || | |||||||| ||||| | | Sbjct 16704 CGATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGA 16763 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | || || |||| |||||||| || ||||| |||||||| || | | Sbjct 16764 GGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGG 16823 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | ||| ||||||||| || | ||| | ||| || || ||||| || |||| Sbjct 16824 CCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCAT 16883 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA--- 93557 | || || || || || |||| | || || || ||| || || || | Sbjct 16884 CCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGGC 16943 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 |||| | ||| ||| || || || || ||||||| || ||| |||||||||| || | Sbjct 16944 GCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAAAAGGAGG 17003 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 | || || || |||||||| | ||| || | ||||| Sbjct 17004 CCTCGGCCTTCTTGTACATTTGCCAGATCTGTTGAT 17039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837272631200