Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3272 122 2e-22 seq2019 109 1e-18 seq1309 100 6e-16 >seq3272 Length=75414 Score = 122 bits (134), Expect = 2e-22 Identities = 261/385 (68%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | |||||||| ||||||||| ||||||||||| ||| Sbjct 16208 TCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATGAAATCGAAGGGGTTGGTG 16267 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | | ||| ||||| | || || || || || || ||||| | Sbjct 16268 GCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGATCGGCGACGAACTCGATG 16327 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || | | |||||| || | | ||| || | || || || | Sbjct 16328 TATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGTGAGG 16387 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC-ACCTGTGCCAGAGACAG 251801 || |||| ||| || | || ||||| | | || |||| ||| | || | Sbjct 16388 AACTCCTGCTCGATGACGACAGCCTCGGTGATGA-TGTCTTCAACCACTTGGTTTGATGG 16446 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| | || | ||| |||| || | |||| | ||||| ||||| || || Sbjct 16447 CTTGTTGTTGAGATGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCATCACG 16506 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||| ||||||||| | | ||||||||||| | ||||| ||| | | |||||| Sbjct 16507 GGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAA 16566 Query 251922 GATTG-CGCAAAAGGATCCAGAGAA 251945 ||| | ||| ||| ||||| ||||| Sbjct 16567 GATCGACGCGAAA-GATCCGGAGAA 16590 >seq2019 Length=112615 Score = 109 bits (120), Expect = 1e-18 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||| | |||| |||||||| || || || || || || || ||||||||||| ||||||| Sbjct 51382 TTGCTATCATCGGACCCAACGGAGCCGGAAAATCAACTCTGATCAAAGTCCTCACTGGCG 51323 Query 280228 AGACCCAGGCCACTG-AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||| | |||| | |||| || |||||||||||| |||| || | ||| || Sbjct 51322 AGACTGTG-CCACAGCAGGGCAAAGTCGAGAAGCATCCCAATTTGCGTATCGGATACATC 51264 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| | | ||| |||||| ||| |||| | |||||| ||||| ||| | Sbjct 51263 AAGCAGCACGCCCTGGAGCACGTCGAGATGCACATGGAGAAGACTCCCAACCAGTACCTC 51204 Query 280347 CAGTGGCGCTATGC 280360 || |||||||| || Sbjct 51203 CAATGGCGCTACGC 51190 >seq1309 Length=302930 Score = 100 bits (110), Expect = 6e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||| || ||||| ||||| || ||||| || || |||| ||||| Sbjct 37674 CTCCCGTATCGCTGTCATCGGTCCCAACGGTGCTGGCAAGTCGACTCTTGTCAACGTCCT 37615 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||| || ||| | || ||| | |||| ||| | |||| ||||| || || | Sbjct 37614 GACCGGTGAG-CTCATCCCAACCAAGGGTGACGTCTACCAGCACGAGAACATTCGTATCG 37556 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || |||||||||||| ||| ||||| ||||||| |||| ||| || | Sbjct 37555 CCTACATCAAGCAGCACGCTTTCGCCCATATCGATCACCACCTCGACAAGACCCCATCCG 37496 Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | ||||| || ||||| | | || | ||| |||||| ||| || ||||||| Sbjct 37495 AGTACATCCAATGGCG-TTTCCAGACTGGTGAGGATCGCGAGACGATGGATCG 37444 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| || ||||| ||||| || ||| ||||| |||| ||| || || Sbjct 37085 CACTCCCGCATGCGTGGTCTCTCTGGTGGTCAGCGTGTCAAGGTTGTGCTCGCTGCCTGC 37026 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||||| |||||| || |||| ||||||||||| |||||||| || ||||| || Sbjct 37025 TCA-TGGCAACGTCCTCACTTGGTCGTCCTCGACGAGCCGACCAACTACCTCGACCGTGA 36967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027792288242580