Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3272 122 2e-22
seq2019 109 1e-18
seq1309 100 6e-16
>seq3272
Length=75414
Score = 122 bits (134), Expect = 2e-22
Identities = 261/385 (68%), Gaps = 4/385 (1%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | |||||||| ||||||||| ||||||||||| |||
Sbjct 16208 TCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATGAAATCGAAGGGGTTGGTG 16267
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||||| | | ||| ||||| | || || || || || || ||||| |
Sbjct 16268 GCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGATCGGCGACGAACTCGATG 16327
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|| || | ||| || | | |||||| || | | ||| || | || || || |
Sbjct 16328 TATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGTGAGG 16387
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC-ACCTGTGCCAGAGACAG 251801
|| |||| ||| || | || ||||| | | || |||| ||| | || |
Sbjct 16388 AACTCCTGCTCGATGACGACAGCCTCGGTGATGA-TGTCTTCAACCACTTGGTTTGATGG 16446
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861
|||||| | || | ||| |||| || | |||| | ||||| ||||| || ||
Sbjct 16447 CTTGTTGTTGAGATGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCATCACG 16506
Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921
|||| ||||||||| | | ||||||||||| | ||||| ||| | | ||||||
Sbjct 16507 GGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAA 16566
Query 251922 GATTG-CGCAAAAGGATCCAGAGAA 251945
||| | ||| ||| ||||| |||||
Sbjct 16567 GATCGACGCGAAA-GATCCGGAGAA 16590
>seq2019
Length=112615
Score = 109 bits (120), Expect = 1e-18
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227
||| | |||| |||||||| || || || || || || || ||||||||||| |||||||
Sbjct 51382 TTGCTATCATCGGACCCAACGGAGCCGGAAAATCAACTCTGATCAAAGTCCTCACTGGCG 51323
Query 280228 AGACCCAGGCCACTG-AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|||| | |||| | |||| || |||||||||||| |||| || | ||| ||
Sbjct 51322 AGACTGTG-CCACAGCAGGGCAAAGTCGAGAAGCATCCCAATTTGCGTATCGGATACATC 51264
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
|||||||| | | ||| |||||| ||| |||| | |||||| ||||| ||| |
Sbjct 51263 AAGCAGCACGCCCTGGAGCACGTCGAGATGCACATGGAGAAGACTCCCAACCAGTACCTC 51204
Query 280347 CAGTGGCGCTATGC 280360
|| |||||||| ||
Sbjct 51203 CAATGGCGCTACGC 51190
>seq1309
Length=302930
Score = 100 bits (110), Expect = 6e-16
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | |||||| || ||||| ||||| || ||||| || || |||| |||||
Sbjct 37674 CTCCCGTATCGCTGTCATCGGTCCCAACGGTGCTGGCAAGTCGACTCTTGTCAACGTCCT 37615
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGG 280278
||| || ||| | || ||| | |||| ||| | |||| ||||| || || |
Sbjct 37614 GACCGGTGAG-CTCATCCCAACCAAGGGTGACGTCTACCAGCACGAGAACATTCGTATCG 37556
Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338
| ||| || |||||||||||| ||| ||||| ||||||| |||| ||| || |
Sbjct 37555 CCTACATCAAGCAGCACGCTTTCGCCCATATCGATCACCACCTCGACAAGACCCCATCCG 37496
Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
| ||||| || ||||| | | || | ||| |||||| ||| || |||||||
Sbjct 37495 AGTACATCCAATGGCG-TTTCCAGACTGGTGAGGATCGCGAGACGATGGATCG 37444
Score = 84.2 bits (92), Expect = 4e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| || ||||| ||||| || ||| ||||| |||| ||| || ||
Sbjct 37085 CACTCCCGCATGCGTGGTCTCTCTGGTGGTCAGCGTGTCAAGGTTGTGCTCGCTGCCTGC 37026
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||||| |||||| || |||| ||||||||||| |||||||| || ||||| ||
Sbjct 37025 TCA-TGGCAACGTCCTCACTTGGTCGTCCTCGACGAGCCGACCAACTACCTCGACCGTGA 36967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027792288242580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |