Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2317 179 7e-40 seq3272 170 4e-37 seq864 129 1e-24 seq2215 113 8e-20 >seq2317 Length=245020 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || ||||||||||| || || ||||| || |||||| Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || | || |||||||| || ||| Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 71550 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACC 71609 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||||||||||||||| |||||||| Sbjct 71610 TCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||||||| || ||| ||| || || ||||| || || || Sbjct 71201 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGA 71260 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | |||||| |||||||| ||||| | |||||||| ||||| Sbjct 71261 AAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 71320 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||||||||| ||||| | ||| ||| ||||| ||||||| ||| || || Sbjct 71321 GATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 71380 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 71381 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 >seq3272 Length=75414 Score = 170 bits (188), Expect = 4e-37 Identities = 572/869 (66%), Gaps = 31/869 (4%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || |||||||||||| | |||||| | Sbjct 16171 CATGACACCGGCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCC 16230 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| ||||||||| || |||||||| |||| | ||||| ||| || Sbjct 16231 GAGAGAGATGTTCTCCATGAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCC 16290 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 |||||| || | || || || |||||||||||||| |||| ||| || | | ||| Sbjct 16291 GAGTGCCAGGAGGAGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTT 16350 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| || | | ||| || |||| |||||| | ||| |||| ||| || |||| | Sbjct 16351 CATTCCGAGGA-GCGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAG 16409 Query 10174 CTTCCTCGACGATGCTCTT-TACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 | || || |||| |||| ||||| | || ||||||| | ||| | || || Sbjct 16410 CCTCGGTGATGATG-TCTTCAACCACTTGGTTTGATGGCTTGTTGTTGAGATGAGAGAAC 16468 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || |||| | ||| | |||||| || ||| |||| ||||||||| ||| Sbjct 16469 AGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAA 16528 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAAT-GGCGCAGAACGACCCGGA 10351 || || |||||||| || || || || |||||| || | ||| ||| || ||||| Sbjct 16529 GTGAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGC-GAAAGATCCGGA 16587 Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC 10408 || |||||| || || | | | |||||| ||| || || |||| | | || Sbjct 16588 GA--AGAAGATGCCTTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTC 16645 Query 10409 GCG-CGAAAAGTATTTCG-AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | || | | | ||| || ||||| | |||||||| | | | ||||| | || Sbjct 16646 TTGTCGGAGA-TCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTC 16704 Query 10466 GATAGCCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGA 10521 ||| || | |||||| | || ||| || |||| || | || | | || | || Sbjct 16705 GATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCG--CTGATGTATGTG--TCGATGA 16760 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATAC 10581 | ||||||||| |||| ||||| | |||| | |||| | ||||||| | Sbjct 16761 GGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGC 16820 Query 10582 GTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGC 10641 | ||| |||| ||||| || ||| | | | |||||||| | || |||| Sbjct 16821 GGGCCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGC 16880 Query 10642 CATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA 10701 |||| | || |||||| | |||| ||| ||||||| |||||| || ||||||| Sbjct 16881 CATCCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCA 16940 Query 10702 G----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAG 10757 | || || |||||| | |||| | ||| | || |||||| | ||||| Sbjct 16941 GGCGCTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAA 16996 Query 10758 AAAGTGGCAACGGCCTTCTTGTACATCTG 10786 || | ||| |||||||||||||||| || Sbjct 16997 AAGGAGGCCTCGGCCTTCTTGTACATTTG 17025 >seq864 Length=88037 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| ||| || | ||||| || | ||||| |||||||| || Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| ||||| || || ||||| || |||||||| ||||||| ||| Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGTCG 47607 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || |||||||||||||| ||||| Sbjct 47608 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 47666 >seq2215 Length=151005 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || |||||| Sbjct 66702 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 66761 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | |||||||| |||||| Sbjct 66762 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 66821 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 66822 ATGCCTTCCTTGTCT 66836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921583461453600