Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3272 351 2e-91 seq2546 253 4e-62 >seq3272 Length=75414 Score = 351 bits (388), Expect = 2e-91 Identities = 596/852 (70%), Gaps = 14/852 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| ||||| ||||||||||| || || Sbjct 17031 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATCTC 16972 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | | ||| || |||| || ||| || Sbjct 16971 TCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGCGCTTCTTCATCTCC 16912 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | |||||||||||||| || || || ||||| ||||| |||||||| | | Sbjct 16911 CACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCGC 16852 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||| ||||| | ||||| ||||||||||||||||||||||| || Sbjct 16851 TTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 16792 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| ||| ||| || || || |||| |||||| || ||| Sbjct 16791 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAAG 16732 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 | || | || ||||| ||||| || | || || |||||| |||||||| ||| Sbjct 16731 CAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGAC 16672 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||||| |||||| | | || | | || || | | | || | ||||| Sbjct 16671 TGGGCGCTGCGATGGATCTCC-GACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCTT 16613 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | ||||| |||| |||||||||||||| || | ||||| || ||||||||| | ||| | Sbjct 16612 TGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTGGTTGAAGAA 16553 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || ||||| || ||||| ||||| ||||| ||||| | | || ||||| Sbjct 16552 GCGTGGTCTC-ATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTGATGAGGGCA 16494 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | |||||||||||||| |||||||| || |||| ||||||| || || Sbjct 16493 TGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCATCTCAACAACAAGCCATCAAACC 16437 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | ||| | ||||||||| ||||| || | |||||| ||||||||||||| | Sbjct 16436 AAGTGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACG 16377 Query 42955 CGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | || ||| ||| | || |||| |||||| | | ||||||||| | |||||| ||| | Sbjct 16376 CCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTC 16318 Query 43014 GTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 |||||||| | |||||| || || || ||| | | ||||||| | | ||| Sbjct 16317 GTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAG-CACTACAACGCCACCAACCC 16259 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 |||||| || |||||||||||||| | | |||||||| ||||| ||||||||||| || Sbjct 16258 CTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGAAGCGTGT 16199 Query 43133 CGCCGACTACCA 43144 || |||||||| Sbjct 16198 CGGTGACTACCA 16187 >seq2546 Length=134672 Score = 253 bits (280), Expect = 4e-62 Identities = 922/1426 (65%), Gaps = 59/1426 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || || ||||| || | ||||| || || ||||| ||||||| || || Sbjct 38876 GTTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGG 38935 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| || ||||| ||||||| ||| ||||| |||||||| | || Sbjct 38936 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCGAC 38995 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 || || ||| | || || ||| || | ||| | |||| || |||||||| Sbjct 38996 GAGAAGCGAGTTGCGGACACCATGC-TCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 39054 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | ||| || | | | ||||||||||| | || ||| |||||| Sbjct 39055 A---------GAGATCAGTAGGAGTCACACCCCACATGTCGTATTGAAGCTCGCCCTTGG 39105 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG--GCCAGCTTACAGCT 244386 |||||| ||||||||| ||| ||| || || || ||| || || | || Sbjct 39106 AGACGGGAGAGCCCTCGTATGTCTCGTATGGTCCAA-GCT-TGGCAGCGAGATCGCATGA 39163 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || ||| || |||| ||||||||||||||||||| |||| | | ||||||| Sbjct 39164 AGCGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACGGGCCT- 39222 Query 244447 GCCGCAG-GT-GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || || ||| || |||| | || ||| | ||||| || || | || ||| Sbjct 39223 -CAGGAGAGTCGAAAGGCATGCGAAGAGCCAAGAAAGCATCGGCAAGACCATTGACACCG 39281 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAG 244561 | |||||||| | || || |||| | | || || || ||||| ||||| | Sbjct 39282 AGACCGATGGGACGATGACGGAAGTTG---CTCTTGCGAGCCTCTGGCACTGGGTAGTGG 39338 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 ||| | ||||| | |||||| | ||| ||||| | | ||| | | ||| Sbjct 39339 TTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTT 39398 Query 244622 TGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCG 244681 | ||||||| | | | || | ||||| || || | | || ||| Sbjct 39399 TCAAAGTCGAA------GCGCTCGTTCTCGATGTCGA------CATAGGTGGGAAGAGCG 39446 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 | || |||||||| ||||| ||||| || | ||||||| || ||||||||| Sbjct 39447 AGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTG 39506 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 |||||||| || |||||| |||| | || || ||| |||| ||||| ||| Sbjct 39507 CAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCG 39566 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 |||||||| || || | ||| ||||||||| || || |||||| | | |||| Sbjct 39567 TCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 39626 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 || | | ||| ||| ||| ||| |||||||||| |||||| || |||||| Sbjct 39627 AGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGC 39686 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 |||||||||| | ||| |||| || | || ||||||||| |||||||| | | Sbjct 39687 TCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAA 39746 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||| | | || || | || ||||||||| || |||| ||| || | | | Sbjct 39747 GTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAG 39806 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || || || | | | ||| ||| || |||||| | || ||||| ||| Sbjct 39807 AACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAG 39866 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 ||||| || ||||||| ||||| ||||| | || | |||||| || ||||| ||||| Sbjct 39867 AAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCG 39926 Query 245162 CCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||| | | | |||||| ||| || | ||||| | || || | || Sbjct 39927 CCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACC 39982 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGATGG 245276 ||| || ||||||||||| ||||||| || || |||| | | | ||| ||| Sbjct 39983 GTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGC----GCGAATTCTG-TGG 40037 Query 245277 ACAT---GCCTAGT-CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 || | ||| | | || ||||||| ||| ||||| | ||||||| |||| | ||||| Sbjct 40038 ACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCG 40097 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || || || || ||||| |||||||| || || |||||||| | |||||| | Sbjct 40098 TAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCG 40157 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGG 245452 ||||| | | | ||||||| ||||| || || || ||||| | |||| | | Sbjct 40158 TTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATG 40217 Query 245453 AACCCGTACGTCTGGA--GCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | ||| |||| | ||||| || |||| ||||||||||| Sbjct 40218 TAGTTGTAGGTCTCAATGGCAGA--CTCAATGTCCTCGCCGTGGAT 40261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944299301668800