Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2317 86.0 5e-12 >seq2317 Length=245020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| || || ||||||||||||||||||||||| || | Sbjct 71202 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAA 71261 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||||||||| || || |||||||| || ||| || Sbjct 71262 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 71321 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | ||| ||||| || || ||| | | | | || | || || | Sbjct 71322 ATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 71381 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| ||||| || || ||||||||||| Sbjct 71382 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397046043510760