Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 141 2e-28
seq3272 122 2e-22
>seq2317
Length=245020
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || |||||||||| |||| || || || || || ||||||| |
Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | ||| || || |||||||||| |||||||| ||||||
Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGG---TCTGGG 71546
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| |||| || || || || || | || ||| ||
Sbjct 71547 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCC 71606
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||||||||| || || || ||||||||||| ||||||||
Sbjct 71607 ACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
||||| || || || | || || | || | ||||| || || || || || |||||
Sbjct 71199 TGTCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCA 71258
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||||| || ||||| || | || || || |||||||| || |||||||| |
Sbjct 71259 GAAAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGT 71318
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || ||||| |||| |||||||| || || | || || ||
Sbjct 71319 GGGATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCC 71378
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 71379 ACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428
>seq3272
Length=75414
Score = 122 bits (134), Expect = 2e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190
||||| |||||||| | | |||| ||||| ||| | |||||| ||||| |||||
Sbjct 16380 GACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAG 16321
Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250
||||| || |||||| || || ||||||||| | |||| ||||| | | ||
Sbjct 16320 TTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACCAAC 16261
Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310
||||||| || ||||| || || |||| ||| ||||||||||||||||| ||||||
Sbjct 16260 CCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGAAGCGT 16201
Query 269311 GTCAGCGACTATCAA 269325
||| | ||||| |||
Sbjct 16200 GTCGGTGACTACCAA 16186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179603313591640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |