Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3272 127 5e-24 >seq3272 Length=75414 Score = 127 bits (140), Expect = 5e-24 Identities = 295/442 (67%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC-AT 243356 |||||| |||||| | | | ||||| || | || ||||| |||| ||| | || Sbjct 16626 CGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTC-GCGTCGAT 16568 Query 243357 CTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAG 243416 ||| ||| || ||| ||| | |||||||||||| | | || |||||| |||| Sbjct 16567 CTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTC 16508 Query 243417 TCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA 243476 || || |||||| | ||| | || | || ||| || | ||| | ||||| Sbjct 16507 CCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCTCAACAACAA 16448 Query 243477 GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATT 243536 || | || | || ||| || | |||||||| || || || | | ||| |||| || Sbjct 16447 GCCATCAAACCAAGTGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTT 16388 Query 243537 CATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTA 243596 | | ||||| | ||||| ||| | || |||||| | | |||||| | || || Sbjct 16387 CCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATA 16328 Query 243597 CATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTC 243656 |||||| ||||| ||||| || | || | || || || | |||| |||||| | Sbjct 16327 CATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGC 16268 Query 243657 CAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 || |||||||| | || |||||| ||| || || ||| || || ||||||||||| Sbjct 16267 CACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGA 16208 Query 243717 AAAGCGTGTCAGTGATTATCAA 243738 ||||||||| |||| || ||| Sbjct 16207 GAAGCGTGTCGGTGACTACCAA 16186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102832238403000