Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2546 241 1e-58 >seq2546 Length=134672 Score = 241 bits (266), Expect = 1e-58 Identities = 606/916 (66%), Gaps = 4/916 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | ||||| || ||||||| ||| ||||| | | ||| ||||| Sbjct 40369 AACTACCAATACTTCGGGTTCAAGACGCTGGAGAGGTCATACCTTTTGAGGATCAATGGC 40310 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| |||| |||| || ||| || | ||||| || || | || || |||||| | Sbjct 40309 AAGGTTGCCGAAAGACCACAACAGATGATCATGCGTGTGGCTGTGGGAATCCACGGCGAG 40250 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 ||||| | || | | | | || ||||| | ||||| | || |||| | Sbjct 40249 GACATTGAGTCTGCCATTGAGACCTACAACTACATGTCGAACAAGTACTTCACACATG-C 40191 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | || || ||||||| || || || || | ||| || | || || ||||| || Sbjct 40190 GTCGCCCACGCTGTTCAGTGCTGGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCAT 40131 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| ||| || || || | ||||| || ||| ||| || | | Sbjct 40130 CGAC-ATGAAGGATGACAGTATTGATGGGATCTACGACACACTGAAGACCTGCGCCATGA 40072 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || |||| || || || ||| ||| |||||| | || || | || | | Sbjct 40071 TCTCTAAGAACGCCGGAGGCATTGGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCAT 40012 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 ||||| |||| ||||| || || |||||||| ||||| || ||||| || || || |||| Sbjct 40011 ACATCAGCGGCACCAACGGAACATCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACA 39952 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || |||||||| |||||||| || | | | || | || || | || Sbjct 39951 ACACCGCTCGCTACGTCGACCAGGGCGGCAATAAGCGACCTGGCGCCTTTGCCATGTACA 39892 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || || | ||| | || || || ||||||||||| || | Sbjct 39891 TCGAGCCATGGCACGCAGATGTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGG 39832 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | || || ||||||| ||| ||||| ||||| || || ||||| | Sbjct 39831 AGGAGGTTCGTGCTCGCGATCTGTTCTACGGTCTGTGGGTCCCAGATCTCTTCATGAAGC 39772 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||| |||| || |||||| | | | || || | || || ||||| ||| | | Sbjct 39771 GTGTTGAGCAAAATACCACCTGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTG 39712 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 | || | || | || || || |||| | || ||||| ||||||||| Sbjct 39711 ATGTCTACGGCGCTGAGTTCGAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAGGGTC 39652 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | || | ||| |||||| ||| || ||| | || | || ||||| | Sbjct 39651 GTGAGACCGTCCGCGCTCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCG 39592 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | ||||| || ||| | | ||||||| ||| ||||| |||| ||||||| || | | | Sbjct 39591 GCACGCCATATATCCTTTACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGG 39532 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| || || ||||||||||| ||||||| ||| |||| || ||| Sbjct 39531 GAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGG 39472 Query 94613 TTGCTGTGTGTAACCT 94628 | || ||||| ||||| Sbjct 39471 TCGCCGTGTGCAACCT 39456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494702297944800