Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3272 129 6e-25 seq2317 105 7e-18 seq864 98.7 1e-15 seq2215 87.8 2e-12 >seq3272 Length=75414 Score = 129 bits (142), Expect = 6e-25 Identities = 495/761 (65%), Gaps = 21/761 (3%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| |||||||||| || ||| ||||| |||| |||||||| || | ||| || Sbjct 16938 AACGACGACGAGCGCTTCTTCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGC 16879 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCA 52204 ||||| ||| |||||||||||| | | ||||||| | || | | |||||| | Sbjct 16878 ATCGTCAACGAGAACCTCATCGAGCGCTT-CAGCGGAGAAGTGCAAATCCCCGAGGCCCG 16820 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| ||| || || Sbjct 16819 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCT 16760 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACGAGCGCGACACG---CTGCTGAATGCGTTCGA 52321 ||| || || | | | || |||| | ||| |||| || | || || |||| Sbjct 16759 CATCGA-CACAT-ACATCAGC-GAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGA 16703 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 || | || ||| | || || |||||| | ||||| || |||||| | | | Sbjct 16702 CAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAA 16643 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | |||| | ||| || | | ||||| ||| |||| ||| | || || ||||| Sbjct 16642 CTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGG 16583 Query 52442 CAGCTTTGCCGCC-ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 | |||| || | ||||| | | || | | || | ||||| ||||| || ||| Sbjct 16582 -ATCTTTCGCGTCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCT 16524 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA 52560 ||||||| | || || || || || || ||||||| |||||||| ||||| | | Sbjct 16523 CCAACGAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCT 16464 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGAC-ACGATCCTGAG--CATGTTCAAGGAGG 52617 | | | | | | || | || || | | ||| ||| ||| |||| Sbjct 16463 ---CTCATCTCAACAACAA---GCCATCAAACCAAGTGGTTGAAGACATCATCACCGAGG 16410 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || | ||||| ||||||| | || | ||| || || | ||| || || |||| Sbjct 16409 CTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGA 16350 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 |||| || ||||||| | ||||||||||| || || |||||||| | || |||| Sbjct 16349 ACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCG 16290 Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 | || ||| ||| ||| |||||| ||| || || || || ||| | ||||| || || Sbjct 16289 G-CAACCAGAAGCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTC 16231 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||| ||||| ||||||||||| ||||| || || Sbjct 16230 GGAGGCAAGACGAACTTCTTCGAGAAGCGTGTCGGTGACTA 16190 >seq2317 Length=245020 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || |||||| ||||| || |||| Sbjct 71463 GACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCG 71522 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||||||||||| || || || || || ||||| ||| || || | | Sbjct 71523 AAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 71582 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | |||||||||||| | || | ||| || ||||| || || || Sbjct 71583 TTG-TCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTT 71641 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 71642 GACGAAGATCTGCAT 71656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || ||| ||||| ||||| || |||| Sbjct 71691 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCG 71750 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| || ||||| ||||| ||||| || || || ||||| ||| || | || | Sbjct 71751 AAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACA 71810 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | ||| || | ||||| ||||| | || | || || ||||||| Sbjct 71811 TTG-TCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTTTCCAGTCA 71862 >seq864 Length=88037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||| | ||| || ||||||||||| || |||| ||| Sbjct 47486 CCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 47545 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTG 138542 | | |||||||||||||| || || || || || || ||| | || | || | ||| Sbjct 47546 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATC-CTGAATCTTGCTCTTGACGTTG 47604 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| |||||||||||||| || | || || || || || || || || Sbjct 47605 -TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 47663 Query 138603 AAAAATCTGCATGGCTT 138619 ||| | | |||| ||| Sbjct 47664 GAAACTGT-CATGACTT 47679 >seq2215 Length=151005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | | | |||||||| || |||||||||||| Sbjct 66701 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 66760 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| || |||||||||||||| || Sbjct 66761 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGG 66820 Query 138507 TATACCTTCTTTGTCGGT 138524 || ||||| ||||| || Sbjct 66821 AATGCCTTCCTTGTCTGT 66838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241432913600