Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 122 8e-23
seq3272 111 1e-19
seq864 82.4 7e-11
>seq2317
Length=245020
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | || | ||| | ||| ||||| || ||||| ||||| |||
Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || || || || || ||| ||||||||||||| || || || ||
Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| ||| ||||| | |||| |||||||| ||| ||
Sbjct 71550 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACC 71609
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||| ||||| || || || || || || ||||||||
Sbjct 71610 TCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656
Score = 86.0 bits (94), Expect = 6e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| || || || ||||| ||||
Sbjct 71658 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 71717
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || || ||| |||| | |||||||| || |||||
Sbjct 71718 AGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 71777
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| ||| |||| ||| ||
Sbjct 71778 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 71837
Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091
|| | ||| | || || || ||||
Sbjct 71838 TCAAGGGTGATGGTCTTTCCAGTCA 71862
>seq3272
Length=75414
Score = 111 bits (122), Expect = 1e-19
Identities = 298/450 (66%), Gaps = 23/450 (5%)
Strand=Plus/Minus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGAT 47197
||| | ||||| || ||| | |||| ||| |||||||||| || | |||| ||| ||||
Sbjct 16626 CGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGG-ATCTTTCGCGTCGAT 16568
Query 47198 ATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTC 47257
|| | |||| | || | ||||| |||||||| || ||||||||| || ||
Sbjct 16567 CTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTC 16508
Query 47258 GAGAGACGAAGGCCTGCACACCAACTTTGCCTG--------TCTCTACTA-CAACACTAG 47308
| || || ||| |||||||| |||||||||| ||||| | ||||| |
Sbjct 16507 CCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCTCAACAACA- 16449
Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368
|| | |||||| | ||| || ||||| | |||| || |||| |||
Sbjct 16448 AGCC-ATCAAACC----AAGTG------GTTGAAGACATCATCACCGAGGCTGTCGTCAT 16400
Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428
||| |||||| || | || || || || | | | ||||||||||| || |
Sbjct 16399 CGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCT 16340
Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAA 47488
||| | | |||||||| || |||||||| || || ||| | || | | ||
Sbjct 16339 CATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAA 16280
Query 47489 GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGAC 47548
| ||| || || || || ||||| || ||| | ||||| || |||| ||||||||
Sbjct 16279 GCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGAC 16220
Query 47549 CAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||| ||||||||||| ||||| || ||
Sbjct 16219 GAACTTCTTCGAGAAGCGTGTCGGTGACTA 16190
>seq864
Length=88037
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/194 (71%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| |||| | || || ||| || || || ||||| ||| |||||
Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
|||||||| || || || || || |||||||| ||| || || ||||| |||| ||
Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTG-TC 47606
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | ||| || |||| ||| | || ||||| || || || || || ||
Sbjct 47607 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 47666
Query 127105 AATCTGCATGGCTT 127118
| | | |||| |||
Sbjct 47667 ACTGT-CATGACTT 47679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475480710091200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |