Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2317 122 8e-23 seq3272 111 1e-19 seq864 82.4 7e-11 >seq2317 Length=245020 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||| | ||| ||||| || ||||| ||||| ||| Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || || ||| ||||||||||||| || || || || Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | |||| |||||||| ||| || Sbjct 71550 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACC 71609 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| ||||| || || || || || || |||||||| Sbjct 71610 TCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| |||| Sbjct 71658 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 71717 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| |||| | |||||||| || ||||| Sbjct 71718 AGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 71777 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||| |||| ||| || Sbjct 71778 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACC 71837 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | || || || |||| Sbjct 71838 TCAAGGGTGATGGTCTTTCCAGTCA 71862 >seq3272 Length=75414 Score = 111 bits (122), Expect = 1e-19 Identities = 298/450 (66%), Gaps = 23/450 (5%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGAT 47197 ||| | ||||| || ||| | |||| ||| |||||||||| || | |||| ||| |||| Sbjct 16626 CGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGG-ATCTTTCGCGTCGAT 16568 Query 47198 ATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTC 47257 || | |||| | || | ||||| |||||||| || ||||||||| || || Sbjct 16567 CTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTC 16508 Query 47258 GAGAGACGAAGGCCTGCACACCAACTTTGCCTG--------TCTCTACTA-CAACACTAG 47308 | || || ||| |||||||| |||||||||| ||||| | ||||| | Sbjct 16507 CCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCTCAACAACA- 16449 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368 || | |||||| | ||| || ||||| | |||| || |||| ||| Sbjct 16448 AGCC-ATCAAACC----AAGTG------GTTGAAGACATCATCACCGAGGCTGTCGTCAT 16400 Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428 ||| |||||| || | || || || || | | | ||||||||||| || | Sbjct 16399 CGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCT 16340 Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAA 47488 ||| | | |||||||| || |||||||| || || ||| | || | | || Sbjct 16339 CATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGGCAACCAGAA 16280 Query 47489 GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGAC 47548 | ||| || || || || ||||| || ||| | ||||| || |||| |||||||| Sbjct 16279 GCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGAC 16220 Query 47549 CAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| ||||||||||| ||||| || || Sbjct 16219 GAACTTCTTCGAGAAGCGTGTCGGTGACTA 16190 >seq864 Length=88037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| | || || ||| || || || ||||| ||| ||||| Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| || || || || || |||||||| ||| || || ||||| |||| || Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTG-TC 47606 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || |||| ||| | || ||||| || || || || || || Sbjct 47607 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 47666 Query 127105 AATCTGCATGGCTT 127118 | | | |||| ||| Sbjct 47667 ACTGT-CATGACTT 47679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475480710091200