Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3272 183 4e-41 seq2546 178 2e-39 >seq3272 Length=75414 Score = 183 bits (202), Expect = 4e-41 Identities = 547/824 (66%), Gaps = 35/824 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 16189 GTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCAT 16248 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAAT--CTGTTTGAGGAG 127347 ||||| || ||||| | | ||| | | ||| || | | | | |||||| Sbjct 16249 GAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAG---GAGGAG 16305 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 |||||| | |||| |||| ||||| | |||| || | |||||| |||| ||| Sbjct 16306 ACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGC 16365 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 ||||||||| ||||| || |||| ||| ||| ||| | ||||| || | |||| | Sbjct 16366 ACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGTC 16425 Query 127468 GTGAATAGTGTCCACCCCAGGTCT-ATTGCGTAAAGTCTTGA--AGAGTTCCACAG---- 127520 | || |||| ||| | || || | || || |||| | ||| Sbjct 16426 TTCAA------CCACTT--GGTTTGATGGCTTGTTGTTGAGATGAGAGAACAGCAGGCAG 16477 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || ||| | ||||| |||||||| ||||| || || ||||| || || Sbjct 16478 GCAAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCA 16537 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| ||||||||||||||||| |||| | | ||| || || ||||||||||| Sbjct 16538 GGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAA-GATCCGGAGAAGAAGAT 16596 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-A 127697 || || | || || || | ||||| |||||||| | | | |||| | | Sbjct 16597 GCCTTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTG-GAGTTCTTGTCGGAGA 16655 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || |||||| | ||||| || ||| ||||||| | | | ||| || | | Sbjct 16656 TCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGA 16715 Query 127758 AGA-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 ||| || | | | || || || || ||||||| | || ||||| || ||||| Sbjct 16716 AGAGGTACGTGCGTTGCT-TGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTC 16774 Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 ||| ||||| | | ||| || | ||| | ||||||| |||| || ||| || Sbjct 16775 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 16833 Query 127876 CTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 || || || || || || | | ||| ||||| || || ||||| || ||| Sbjct 16834 TTGCACTTC-TCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCAG 16892 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCC 127991 | || || ||||||| | ||||| | || | ||||||||| | |||| Sbjct 16893 CGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGGCGCTTGTTCC 16952 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 |||||| || ||||| |||||||| | |||||| ||||||||| Sbjct 16953 AGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAA 16996 >seq2546 Length=134672 Score = 178 bits (196), Expect = 2e-39 Identities = 952/1494 (64%), Gaps = 43/1494 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| ||||| || | ||||||||| | ||||||||| Sbjct 38877 TTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC 38936 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| ||| |||| ||| || | ||||| || || |||||||| || | | Sbjct 38937 TCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCGACG 38996 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 ||||| |||||||| ||| | | || ||||||| ||| ||||||| || Sbjct 38997 AGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCCAG 39056 Query 116044 TTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 || | | | || | | ||||||| || | || || || | ||| | || | Sbjct 39057 A-GATCAGTAGGAGTCACAC-CCCACATGTCGTATTGAAGCTCGCCCTTGGAGACGGGAG 39114 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCT---CCGCCAATTCGGAGCTCGCCTCGA 116158 | ||||| ||||||| ||||| || || || | || | ||| | || || Sbjct 39115 AGCCCTCGTATGTCTCGTATGGTCC---AAGCTTGGCAGCGAGATCGCATGAAGCGGTGA 39171 Query 116159 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAA 116217 | || ||||| || || ||||| || || || || | || | |||||| || Sbjct 39172 GAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACG-GGCCTCAGGAGAG 39230 Query 116218 TC-AAACGC--GAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || ||| || | || | ||| | | |||| || ||||| | ||||||||| || Sbjct 39231 TCGAAAGGCATGCGAAGAGCCAAGAAAG---CATCGGCAAGACCATTGACACCGAGACCG 39287 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATC 116333 || || ||||| | | || ||| ||||| ||| ||| || || || || Sbjct 39288 ATGGGACGATGACGGAAGTTGCTCTTGCGAGCC-TCTGGCACTGGGTAGTGGTTGACCTC 39346 Query 116334 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 116393 ||| | | | || | || |||||||| || ||||| | ||||||||||| | || Sbjct 39347 GATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTTTCAAAGTC 39406 Query 116394 AAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 116452 || | || || ||| | |||||| | ||||| |||| || || || || |||| Sbjct 39407 GAAGC-GCTCGTTCTCGATGTCGACATAGGTGGGAAGAGCGAGAGATGCAAGGTTGCACA 39465 Query 116453 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 116512 | | | |||||| | |||||||||| || || || || || | || || || | Sbjct 39466 CGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGA 39525 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 |||| ||||| ||||| || || ||| ||| || |||||||| || ||||||| Sbjct 39526 TGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTAAAGGATATATG 39585 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACA 116631 |||| || ||||| ||||| | || ||| || || | ||| | || ||| || | Sbjct 39586 GCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGA-----GCTTCTGAGCGC- 39639 Query 116632 GTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | || | | || |||| |||| |||||| ||| || |||| ||||| Sbjct 39640 -GGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCA 39698 Query 116686 TCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 | || | || | || || || || | || || | | || ||| | Sbjct 39699 GCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTA 39758 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 | |||||| |||||||||||||| ||||||| ||| || | |||| ||||| ||| Sbjct 39759 TTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGAACAGATCGCGA 39818 Query 116806 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 116865 ||| | || || | || || || || | ||||| ||| | || ||| ||| Sbjct 39819 GCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGAAGACATCTGCG 39878 Query 116866 TGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC-GACGACCAGCCTGGTTTACA 116922 ||||| || || | ||||| || | | || | || | || |||||| || Sbjct 39879 TGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGCCCTGGTCGACG 39938 Query 116923 TACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTT 116982 || | || || |||||| || || ||||| || | || ||| | ||| || || Sbjct 39939 TAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGATGTTCCGTTG 39998 Query 116983 GTCCCCCGAATACGAGACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCC 117041 || || | || | | | || | || || ||||| || | ||||| || || Sbjct 39999 GTGCCGCTGATGTATGCTCCGGTTGCGC-GAATTCTGTGGACGTTGAGCCCAATGCCTCC 40057 Query 117042 TGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 117101 || ||| ||||| ||||| | | || || ||||||||||||| || ||| Sbjct 40058 GGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCAATACTGTC 40117 Query 117102 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 117161 | |||| | |||||||||||||| | || || | | ||||| ||||| |||| Sbjct 40118 ATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCAGCACTGAA 40177 Query 117162 GAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGA 117220 || || || | ||| || |||| ||| | | ||||| | | ||||||||| | | Sbjct 40178 CAGCGTGGGCGACGCATGTGTGAA-GTACTTGTTCGACATGTAGTTGTAGGTCTCAATGG 40236 Query 117221 CAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTG 117280 |||| |||||| || ||||| || || | | || ||||| | ||| | ||| ||| Sbjct 40237 CAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCATCTGTTGTGGTC 40296 Query 117281 TTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 |||| | | |||| || |||| ||||| | |||||| ||||||| Sbjct 40297 TTTCGGCAACCTTGCCATTGATCCTCAAAAGGTATGACCTCTCCAGCGTCTTGA 40350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613481279320800