Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3272 131 3e-25
seq2546 91.5 2e-13
>seq3272
Length=75414
Score = 131 bits (144), Expect = 3e-25
Identities = 344/521 (66%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| ||||| |||||||| | | || || |||||||| |||| |||||
Sbjct 16204 CTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATGAAATCGAAGGGGTT 16263
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| ||| ||||| | ||||| ||| || | | || || || || ||
Sbjct 16264 GGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGATCGGCGACGAACTC 16323
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| ||||| ||| ||| || || || ||| | ||||| || || |
Sbjct 16324 GATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGT 16383
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT--CTGCGAGACACGTTCGTAC 159886
|| ||||||| ||| || |||| || ||||| | || || | | ||| || ||
Sbjct 16384 GAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGTCTTCAAC-CAC-TTGGTTT 16441
Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTA---AACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943
|||||| ||| | | | ||||| ||||| ||||||||| |||||
Sbjct 16442 GATGGCTTGT------TGTTGAGATGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATG 16495
Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003
||||| || || || |||| ||||||||| | ||||||| ||||||| ||||||
Sbjct 16496 CCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCATGAGACCACGCTTC 16555
Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063
|| | ||| || || | ||| |||| ||| || ||||| || || | ||| |||||
Sbjct 16556 TTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGATGCCTTCGATGGCGGCAAAG 16615
Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123
|| | ||| | |||| | || ||| |||| | |||| | ||||| |||
Sbjct 16616 GCGATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGATCCATCGCAGCGCCCAGTCA 16675
Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164
|||||||| |||||| || ||| |||| |||||| ||
Sbjct 16676 GCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAA 16716
>seq2546
Length=134672
Score = 91.5 bits (100), Expect = 2e-13
Identities = 221/335 (66%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244
||||||| | || || || || | ||||| | |||| | | | |||| ||||| ||
Sbjct 38874 GGGTTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTAT 38933
Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304
|| ||||| ||||||| ||| | ||||| | |||| || || |||||||||||
Sbjct 38934 GGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCG 38993
Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364
| ||| || |||||||| ||||| | | || | || ||| || | || ||||||
Sbjct 38994 ACGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCC 39053
Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424
| || | || |||| |||||||||||| | |||| ||| | ||| ||
Sbjct 39054 CAGAGATCAGTAGGAGTCACACCCCACATGTCGTATTGAAGCTCGCCCTTGGAGACGGGA 39113
Query 204425 CTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATG 204484
||||| ||| ||| || || | || | || || | ||| || |||| |
Sbjct 39114 GAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGGCAGCGAGATCGCATGAAGCGGTGAGA 39173
Query 204485 GCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519
|| | ||| |||||||| |||||||||| |||
Sbjct 39174 GCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTT 39208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795121604692800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |