Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3272 131 3e-25 seq2546 91.5 2e-13 >seq3272 Length=75414 Score = 131 bits (144), Expect = 3e-25 Identities = 344/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||| | | || || |||||||| |||| ||||| Sbjct 16204 CTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATGAAATCGAAGGGGTT 16263 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||||| | ||||| ||| || | | || || || || || Sbjct 16264 GGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGATCGGCGACGAACTC 16323 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| ||| ||| || || || ||| | ||||| || || | Sbjct 16324 GATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGT 16383 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT--CTGCGAGACACGTTCGTAC 159886 || ||||||| ||| || |||| || ||||| | || || | | ||| || || Sbjct 16384 GAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGTCTTCAAC-CAC-TTGGTTT 16441 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTA---AACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 |||||| ||| | | | ||||| ||||| ||||||||| ||||| Sbjct 16442 GATGGCTTGT------TGTTGAGATGAGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATG 16495 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 ||||| || || || |||| ||||||||| | ||||||| ||||||| |||||| Sbjct 16496 CCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCATGAGACCACGCTTC 16555 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 || | ||| || || | ||| |||| ||| || ||||| || || | ||| ||||| Sbjct 16556 TTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGATGCCTTCGATGGCGGCAAAG 16615 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || | ||| | |||| | || ||| |||| | |||| | ||||| ||| Sbjct 16616 GCGATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGATCCATCGCAGCGCCCAGTCA 16675 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 |||||||| |||||| || ||| |||| |||||| || Sbjct 16676 GCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAA 16716 >seq2546 Length=134672 Score = 91.5 bits (100), Expect = 2e-13 Identities = 221/335 (66%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244 ||||||| | || || || || | ||||| | |||| | | | |||| ||||| || Sbjct 38874 GGGTTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTAT 38933 Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304 || ||||| ||||||| ||| | ||||| | |||| || || ||||||||||| Sbjct 38934 GGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCG 38993 Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364 | ||| || |||||||| ||||| | | || | || ||| || | || |||||| Sbjct 38994 ACGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCC 39053 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | || | || |||| |||||||||||| | |||| ||| | ||| || Sbjct 39054 CAGAGATCAGTAGGAGTCACACCCCACATGTCGTATTGAAGCTCGCCCTTGGAGACGGGA 39113 Query 204425 CTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATG 204484 ||||| ||| ||| || || | || | || || | ||| || |||| | Sbjct 39114 GAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGGCAGCGAGATCGCATGAAGCGGTGAGA 39173 Query 204485 GCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 || | ||| |||||||| |||||||||| ||| Sbjct 39174 GCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTT 39208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795121604692800