Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2317 107 5e-18 seq864 107 5e-18 seq2215 91.5 3e-13 >seq2317 Length=245020 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||||| | || | || || || |||||||| |||||||| Sbjct 71237 CTCCTTCTGAATGTTGTAGTCAGAAAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 71296 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 |||||| ||||| |||||||| || || || || || ||||| ||||||| Sbjct 71297 GATGAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTCACGTT 71356 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| ||||||| || || || || | ||||| ||||| || ||||| || || || Sbjct 71357 GTCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGAC 71416 Query 199618 AAAAATTTG 199626 || ||||| Sbjct 71417 GAAGATTTG 71425 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || |||||||| || | ||||||||| | | || Sbjct 71436 CGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTG 71495 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| ||||||||||| | ||||| ||||| || ||| || Sbjct 71496 CGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCC 71555 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || ||||| Sbjct 71556 TCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACCTCCAAG 71615 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || || || || || || Sbjct 71616 GTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 71653 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | || | ||||| Sbjct 71673 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 71732 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||||||||| ||||||||||| ||| ||| || || ||| Sbjct 71733 TCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 71792 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | || || || | ||||| ||| Sbjct 71793 TGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTC 71852 Query 199598 TTACCCGT 199605 || || || Sbjct 71853 TTTCCAGT 71860 >seq864 Length=88037 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | ||| | ||||| || || |||||||||||||||| Sbjct 47486 CCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 47545 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||| |||||||| ||||| || ||||||||||| ||| ||| | Sbjct 47546 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGT 47605 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| |||||||| || ||||| | Sbjct 47606 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 47665 Query 199620 AA 199621 || Sbjct 47666 AA 47667 >seq2215 Length=151005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 66717 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 66776 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || |||||||| ||||||||||| || ||||| |||||||| ||| ||||| Sbjct 66777 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTC 66829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178870545326460