Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2317 134 2e-26 seq2215 98.7 1e-15 >seq2317 Length=245020 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| |||| || || |||||||||||||| Sbjct 71465 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 71524 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | || |||||||||| ||||||| ||||| | Sbjct 71525 GATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 71584 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| ||||| |||| ||||| || ||||| || || || || || Sbjct 71585 GTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGAC 71644 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 71645 GAAGATCTGCAT 71656 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| |||| || |||||||| || || |||||||| || Sbjct 71202 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAA 71261 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || ||||||||||||||||| || | |||||| ||||| | || Sbjct 71262 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 71321 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||||||||| ||||||| ||| | ||| | | | ||||| || ||||| Sbjct 71322 ATACCCTCCTTGTCTTGGATCTTCGACTTCA-CGTTGTCGATTGTGTCTGATGACTCCAC 71380 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 71381 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || |||||| | || || || |||||||||||||| Sbjct 71693 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAA 71752 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 || | |||||||||||| | || | || |||||||||| |||||| |||| Sbjct 71753 GATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTT 71806 >seq2215 Length=151005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| |||||||||||||||||||| Sbjct 66737 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 66796 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| |||||| ||||| | || | || |||||||| Sbjct 66797 GATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTC 66835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565214518677600