Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3272 356 2e-93 seq2317 120 3e-22 seq2215 100 3e-16 seq864 100 3e-16 >seq3272 Length=75414 Score = 356 bits (394), Expect = 2e-93 Identities = 599/851 (70%), Gaps = 27/851 (3%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAG 132662 ||||| || || || || ||||| || || || || || || ||| || || ||| Sbjct 16184 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCC-TCCGAGAGAGATGTT 16242 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGAC 132719 | ||| ||||| |||||||||| | |||||||||||| | |||||| | | | Sbjct 16243 CTCCATGAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCCGA---GTGCCAG 16299 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCA 132778 ||| || | ||||| ||||||||||||||||| ||||| | || || || | ||| | Sbjct 16300 GAGGAGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCG-TTCATTCCGA 16358 Query 132779 GCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTG 132837 | || ||||| || || || || ||||| || ||||||||| |||| || |||||| Sbjct 16359 GGAG-CGCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTG 16417 Query 132838 ACGATTTCCCTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 | ||| || ||| | | | | | |||| | ||| ||||| || ||| Sbjct 16418 ATGATGTCTTCAACCACTTGGTTTGATGGCTTGTTGTTG-AGATGAGAGAACAGCAGGCA 16476 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 ||||||||| |||| |||||| || | ||||||||| |||||| |||||| | ||| Sbjct 16477 GGCAAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCC 16536 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||| || || || || | ||| || || | |||||| || || ||||||| Sbjct 16537 AGGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGAT 16596 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 ||| |||| ||| || || || | || || | | || |||| | ||| || ||| Sbjct 16597 GCCTTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGAGTTCTTGTCGGAGAT 16656 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| ||||||||||| || ||||| | || ||| || || | ||||||||||| || Sbjct 16657 CCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAA 16716 Query 133137 CAA--ACG-GAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATAC 133191 | ||| | ||| || || ||| | ||| |||||||||||| || || Sbjct 16717 GAGGTACGTGCGTTGCTTG-----GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTAT 16771 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | || ||||| | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 16772 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGG 16831 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 | ||||||||| ||| ||||||| || || |||||||||||||| || || Sbjct 16832 ATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCA 16891 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCC 133368 ||||| |||||||| ||||| |||||| |||||||| |||||||| |||| | | Sbjct 16892 GCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGGCGCTTGTTC 16951 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||||| | ||||||||| || || | ||||||| | |||||||| || |||||||| Sbjct 16952 CAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCC 17011 Query 133429 TTTTTGTACAT 133439 || |||||||| Sbjct 17012 TTCTTGTACAT 17022 >seq2317 Length=245020 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || ||||| |||| || ||| | | Sbjct 71428 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 71369 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || || | ||||| Sbjct 71368 GACACAATCGACAACG-TGAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 71310 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || |||| || || || |||||||| Sbjct 71309 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTTTCTGACTACAA 71250 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| || ||||| |||||||| ||| || | || || Sbjct 71249 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTGCTCCGTCTGCGTGGAGG 71202 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || |||||| | || || ||| | | Sbjct 71656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 71597 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| | |||||| Sbjct 71596 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 71537 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || |||| ||||| ||| |||||||||| Sbjct 71536 CAGCGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACGCTCTCCGACTACAAC 71477 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | ||||| ||| | || || || Sbjct 71476 ATTCAGAAGGAGTCCACGCTTCATCTCGTCCTCCG 71442 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||||||| | || || ||| || | || | | | | || | | |||| Sbjct 71860 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATG--TGAAGA 71803 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| ||||| | ||||| ||||| ||||| | ||| |||| Sbjct 71802 GCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCA 71743 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || || || || | ||||||||||| ||||||||||||||| ||||| | || || | Sbjct 71742 AGCAACTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCC 71683 Query 38446 ATTTGGTGCTGCG 38458 | |||||||| || Sbjct 71682 ACTTGGTGCTCCG 71670 >seq2215 Length=151005 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || ||||| | ||||||||||| || || | ||| ||||| ||||| || Sbjct 66835 GACAAGGAAGGCATTCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 66776 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || |||||| ||||||||||||||| ||||| |||| || || ||||| || Sbjct 66775 GACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTTCTC 66716 Query 38457 CGT 38459 ||| Sbjct 66715 CGT 66713 >seq864 Length=88037 Score = 100 bits (110), Expect = 3e-16 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| || |||||| |||| || ||| | |||||| | | Sbjct 47666 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 47607 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | |||| | |||| || || | || || |||||||| || | ||||||||||| Sbjct 47606 GACAACG--TCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGAT 47549 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || || || || || | || || |||| ||||||||||||||| | Sbjct 47548 TGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTCTCAGCGACTACAACATCCAGA 47489 Query 38431 AGG 38433 ||| Sbjct 47488 AGG 47486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500151667699200