Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1648 251 9e-62 seq1086 116 5e-21 seq2448 104 3e-17 >seq1648 Length=145799 Score = 251 bits (278), Expect = 9e-62 Identities = 514/758 (68%), Gaps = 18/758 (2%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAA 7462 ||||||| || ||||| ||||| | | |||||| | || ||| | | ||||| Sbjct 58731 TTCTTATTCTTGCGTTTGAACTCATTAACGAAGTGGTTGACAAGGCGGTTG---TCGAAG 58675 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || ||||||||||| || || || || || | ||||| || ||||| || | || Sbjct 58674 TCCTCGCCACCCAAGTGGGTGTCTCCAGCAGTGGACTTGACCTCGAAGATGCCCTCCTCG 58615 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | |||||||| || ||||||||||||| || || ||||| ||||| Sbjct 58614 ATGGTGAGAAGGGAAACATCGAAGGTACCACCACCCAAATCGAAGATGAGCACGTTGCGC 58555 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || | ||||| |||||||| || || || || || || || || || || || Sbjct 58554 TCGCCCTCAGTCTTCTTGTCGAGACCATAGGCAATGGCAGCGGCGGTAGGCTCGTTGATG 58495 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || || || ||||||||| || || | || || || || ||||| || ||||| Sbjct 58494 ATGCGCAGGACGTTCAGGCCGGCGATGAGACCAGCGTCCTTGGTTGCTTGGCGCTGCGAG 58435 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| ||||| || || || || || || |||| |||| || ||| || || | Sbjct 58434 TCGTTGAAGTATGCTGGAACAGTGACAACGGCGTTGTTGACAGTCCCACCAAGGTATGCC 58375 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 ||||| | || ||| || || || ||||| ||||||||||| || | | |||||| Sbjct 58374 TCCGCAGTCTCGCGCATCTTTGTGAGGACCATTGATGAAATCTCCTCGGGTGTAAACTGC 58315 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---GGGGATA 7879 ||| || || || || || || | | | || || || |||| | ||| Sbjct 58314 TTCTCCTCGCCTTTGAACTCGACCTGCACGACCGGCTT----GC--CACCCTTGTTGATG 58261 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 ||||| | | | | ||||| ||| | || |||| || ||||| | ||| Sbjct 58260 ACCTTGAATGGGAAGTGCTTCATGTCGGCCTGCACCTCAGCATCGTCGAACTTCCGGCCG 58201 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || || ||||| || || ||||||||||| ||||||||||| ||||||||| || Sbjct 58200 ATCAGGCGCTTGGCGTCGAAAACTGTGTTGACTGGGTTCATGGCGACTTGGTTCTTTGCG 58141 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 | ||| || || || || || | || || || |||||| |||| || || || || Sbjct 58140 GAGTCACCAATGAGGCGCTC---GGTGTCGGTGAAGGCGACGAACGAGGGTGTTGTGCGG 58084 Query 8060 TTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAA 8119 || || |||||||| || || || || | |||||| | | ||| ||| || || || Sbjct 58083 TTACCCTGGTCGTTGGCGATGATCTCAATGCGGTCATCTCTGTAGATGCCCACACAGGAG 58024 Query 8120 TACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 || || || || ||||| |||||||||||| | | ||| Sbjct 58023 TAGGTCGTACCCAAATCGATACCGATTGCTGGTGCCAT 57986 Score = 159 bits (176), Expect = 4e-34 Identities = 258/371 (70%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||| ||||| || | || Sbjct 59171 ATGGCGGCCTGGACGGCGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGAGCGGTTG 59112 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || | || || | ||| | || | || ||||| || || ||| Sbjct 59111 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGGATACGGGTGGAT 59052 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 ||||||||||| ||||| || | || || || |||||||| | ||| || || || Sbjct 59051 CCACCGACCAAGACGATCTCGTGGACGGAAGACTTGTCGATCTTGGCGTCGCGGAGAGTG 58992 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || ||||| ||||| | |||| ||||| ||||| || || ||| Sbjct 58991 CGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCCTCGAAGCGAGCA 58932 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || || || ||||| | ||| || || || || | || Sbjct 58931 CGGGTGATGGAGGTGTAGAAGTCGACACCCTCGTAGAGCGAGTCGATCTCGATAGAGGTC 58872 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 ||||| | ||||| | || ||||| || ||||| || || || || | ||| || ||| Sbjct 58871 TGTGCGGAGGAAGAGAGGGTGCGCTTCGCACGCTCGCAAGCGGTGCGCAGACGGCGGAGG 58812 Query 7382 GCACGCGGGTT 7392 || || | ||| Sbjct 58811 GCGCGGGCGTT 58801 >seq1086 Length=95072 Score = 116 bits (128), Expect = 5e-21 Identities = 238/349 (68%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 7435 GAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493 |||||| |||| |||| | | |||||| || | |||||||||||| || || || || | Sbjct 28383 GAAGTGCTCGA-GGAGGTTGGTATCGAAGTCCTGACCACCCAAGTGAGTGTCACCAGCAG 28441 Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553 | || ||||| |||| ||| || | |||| | | ||| ||||| || || |||| Sbjct 28442 TAGCCTTGACAGTGAAGACACCACCCTGGATGTGGAGAAGCGAGACATCGAAAGTGCCAC 28501 Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC--TTTGTTCTTAT-CGAGACCGT 7610 |||| || || | || || ||||| || | ||| | | | || ||||||||| Sbjct 28502 CACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGACTTTCCGGATCCGAGACCGT 28561 Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAG 7670 | |||||||| || || || || || || || || || ||| ||| ||||||| || | Sbjct 28562 AGGCGATAGCGGCAGCGGTAGGCTCGTTGATGATGCGGAGAACGTTGAGGCCAGAGATGG 28621 Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 | || || || || ||||| | || ||||| ||||| || || || || | || Sbjct 28622 CACCGGCGTCCTTGGTGGCTTGCCTCTGGTTGTCGTTGAAGTATGCGGGAACGGTGATGA 28681 Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | || | | ||| ||||| ||||| | || ||||| || ||||| Sbjct 28682 CGGCCTTAGAGACCTTCTTGCCGAGCTTGACCTCAGCGATTTCCTTCAT 28730 >seq2448 Length=190995 Score = 104 bits (114), Expect = 3e-17 Identities = 221/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || ||||| || ||||| | || || || || | ||| Sbjct 114104 TCGAAATCCTCACCACCGAGATGGGTATCACCGGCGGTAGATTGAACCTCGAACACACCC 114163 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA-GTAC 7575 || | | | | | || ||||| || ||||||||||| || || | | || | | Sbjct 114164 TGGTCGACGGTCAGGACGGAGACATCGAAGGTACCACCACCGAGATCGTAGACGATGATC 114223 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || | ||| | |||| ||||| ||||| || | ||| || || || || || Sbjct 114224 TGGCGT-TCCTTGTC---GGTCTTGTCGAGGCCGTAGGCCAAAGCGGCGGCGGTGGGCTC 114279 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | || ||| ||| || ||||| || | | ||||| || || || || Sbjct 114280 GTTGACCACGCGGAGAACGTTGAGACCAGCGATCGCGCCGGCATCCTTGGTGGCGGCACG 114339 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || || || ||||| |||| ||||| |||| ||||| Sbjct 114340 CTGAGCGTCGTTGAAGTAGGCTGGAACAGTGACGACTGCGTTGGTGACCTTCTCTCCGAG 114399 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || |||| || ||||| || Sbjct 114400 GTAGGACTCGGCGACCTCCTTCATCTT 114426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635105965639200