Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2546 203 4e-47 seq3272 89.7 6e-13 seq2566 86.0 8e-12 >seq2546 Length=134672 Score = 203 bits (224), Expect = 4e-47 Identities = 653/992 (66%), Gaps = 36/992 (4%) Strand=Plus/Minus Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073 |||||||||||||| ||| || | ||| | || | || ||||| || | ||| Sbjct 39889 GAGCCATGGCACGCAGATGTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAG 39830 Query 112074 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 |||| || ||| |||||||| |||| || ||| ||| | |||||||||||||||||| | Sbjct 39829 GAGGTTCG-TGCTCGCGATCTGTTCTACGGTCTGTGGGTCCCAGATCTCTTCATGAAGCG 39771 Query 112133 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 |||||| | | | || ||| || | | || || || || |||||||| | || Sbjct 39770 TGTTGAGCAAAATACCACCTGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGA 39711 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA----AAGTCGGG 112248 || | || | ||||| || | || ||| |||||| || ||| || Sbjct 39710 TGTCTACGGCGCTGAGTTCGAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAG--GGT 39653 Query 112249 CGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAG 112307 || || ||| || | ||| | || | | ||| | || || ||| || ||||||||||| Sbjct 39652 CG--TGAGACCGTCCGCGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAG 39596 Query 112308 ACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT 112367 || || || |||||||| |||||||| ||||| ||| ||||| || || |||||| Sbjct 39595 ACCGGCACGCCATATATCCTTTACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAAT 39536 Query 112368 TTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 112427 ||||| ||| || ||||||||||| || || ||| | || | || | ||| Sbjct 39535 TTGGGAACCATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGAT 39476 Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 112487 ||| || ||||| ||||| ||||| ||||||| |||| ||||| || |||| Sbjct 39475 GAGGTCGCCGTGTGCAACCTTGCATCTCTCGCTCTTCCCACCTATGTCGACATCGAGAAC 39416 Query 112488 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 || || || | |||||| || ||| | || || | || ||||| || ||| | ||| Sbjct 39415 GAGCGCTTCGACTTTGAAAAGCTTCACCAGGTCACACAGACCGTCACCAAGAACTTGAAC 39356 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACA 112606 | | || || || ||||| || ||| ||||| || || | | || Sbjct 39355 AAGATCATCGAGGTCAACCACTACCCAGTGCCAGA-GGCTCGCAAGAGCAACTTCCGTCA 39297 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 112666 ||||| || |||||||||||| | ||||| || |||| ||| | | ||| || || Sbjct 39296 TCGTCCCATCGGTCTCGGTGTCAATGGTCTTGCCGATGCTTTCTTGGCTCTTCG-CATGC 39238 Query 112667 ATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACG 112725 ||| || || || || | |||| | || || ||||| || || |||| Sbjct 39237 CTTTCGACTCTCCTGAGGCCCGTCAGCTCAACATTCAGATCTTCGAGACCATCTACCACG 39178 Query 112726 CCGCT-------CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 | ||| ||| | |||| || | || || || | ||| ||||| || || Sbjct 39177 CTGCTCTCACCGCTTCATGCGATCTC---GCTGCCA-AGCT---TGGACCATACGAGACA 39125 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837 | ||||| ||||| | || |||||| | |||||||| || ||||||| |||| | Sbjct 39124 TACGAGGGCTCTCCCGTCTC-CAAGGGCGAGCTTCAATACGACATGTGGG-GTGTGACTC 39067 Query 112838 CAAGCT--TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 | | || || || ||||||| ||| ||||||| ||| ||| | ||| | || Sbjct 39066 CTA-CTGATCTCTGGGACTGGGCCGCACTCAAGGCCAAGATCGCCGAGCATGGTGTCCGC 39008 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 ||| ||| | | || || |||||||| || |||||| | || ||| |||| || Sbjct 39007 AACTCGCTTCTCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTCAAC 38948 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTA 112987 || ||||| || || ||||| | |||||||| Sbjct 38947 GAGTGCTTCGAGCCATACACCAGCAACATCTA 38916 >seq3272 Length=75414 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| || ||| |||| ||||| | || || ||||||||||| || || | Sbjct 16637 CCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTT 16578 Query 102232 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||| | || | ||| | |||||||| ||||||||||| || ||| ||||||||| Sbjct 16577 TC-GCGTCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAAC 16519 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || || ||||| ||||| | ||| || ||||| Sbjct 16518 GAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGC 16478 >seq2566 Length=144022 Score = 86.0 bits (94), Expect = 8e-12 Identities = 222/334 (66%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 176732 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 176791 || || |||||||| || ||||| | ||| ||| ||||||||||| | | | ||||| Sbjct 121914 AGGCCTTTGATGTGAGAGCCGTCATGATCTTGATCGGTCATGATCATCAAATGGCCATAT 121973 Query 176792 CG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAG 176850 || |||||| |||| || ||||| || || || |||| || |||||||| Sbjct 121974 CGCAAGCTC-TTTGCATCAGTGTACTCCTTCTTGTGCTGGAGCCCCAGGAACTTCTTGAT 122032 Query 176851 ATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA 176910 | | || ||| ||| | | ||| ||||| ||||| ||||| ||| Sbjct 122033 GTTCTGGATCTCAGCGTTCTTCGAAATCTGATCAACAGATGCATCGCGAACGTTCAAGAT 122092 Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| || || | || ||||||||| |||| ||| || ||||||| | || || | Sbjct 122093 CTTTCCTCGCAATGGAAAGACACCGAAGTGGTCGGGATTGACCACAGCACGTCCAGCCAA 122152 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGC 177030 || ||| ||||||||||| || |||| ||| || |||||| || | || | Sbjct 122153 GGCAAGCAGGGCAGCAGAATCACCTTCAGTCAAGATCAGAGTACACCTG--TGTCCGTCC 122210 Query 177031 --CGTACCCGCCTTGTTCGCATCATCCAATTTGG 177062 || || |||||||||||||| ||| |||| Sbjct 122211 TTGGTGCCGGCCTTGTTCGCATCTGTCAACTTGG 122244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620716173633600