Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2546 181 2e-40 seq3272 178 2e-39 >seq2546 Length=134672 Score = 181 bits (200), Expect = 2e-40 Identities = 931/1464 (64%), Gaps = 57/1464 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||||||||| |||||| ||||||| |||||| ||| Sbjct 39168 GTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACGGGCCTCAGGA 39227 Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| ||||| || || | ||||| | ||||| || || | || |||| ||| Sbjct 39228 GAGTCGAAAGGCATGCGAAGAGCCAAGAAAG-CATCGGCAAGACCATTGACACCGAGACC 39286 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||||| | || | |||| | || |||||||| || || |||||| || Sbjct 39287 GATGGGACGATGACGGAAGTTGCTCTTGCGAGCCTCTGGCACTGGGTAGTGGTTGACCTC 39346 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | |||| |||| | | |||| | ||||| | Sbjct 39347 GATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTTT------- 39399 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | || ||| || |||| | || ||| | | | || || | || Sbjct 39400 -----CAAAGTCGAAGCGCTCGTTCTCGATGTCGACATAGGTGGGAAGAGCGAGAGATGC 39454 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 ||||| |||||||| ||||| || || |||| |||||||| || |||||||| Sbjct 39455 AAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTT 39514 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| |||| | || || || ||||| ||||||||||||||||| Sbjct 39515 GGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTA 39574 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 || ||| | || ||| ||||| |||||| | || || | |||||| | ||| Sbjct 39575 AAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCT-TCT 39633 Query 221896 G-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | |||| || || ||| ||| ||| | | || || | || | || || ||| Sbjct 39634 GAGCGCGGACGGT-CTCACGACCCTTGCCCTCACGCTCGTATC--GCTCG---TACAGCT 39687 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 || |||| | ||||| | || |||| || || ||| | || ||||||| | Sbjct 39688 CCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAG 39747 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | || | | || | || ||||||||| || |||| |||||| | | | Sbjct 39748 TCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGA 39807 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | | || ||||||| |||| ||| || | |||||||| || | Sbjct 39808 ACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGA 39867 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || |||||||| ||||| | || | ||| | ||||| |||||||| ||||| | Sbjct 39868 AGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGC 39927 Query 222192 CCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||| || | | | | || | ||| || | || || | ||||| || ||| Sbjct 39928 CCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCG 39983 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 |||||| ||||||||||| | ||||| || ||| || | | | || | ||| Sbjct 39984 TTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGC---GAATTCT-GTGGAC 40039 Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 | || || || ||||||| || ||||||||||||||| |||| || ||||| Sbjct 40040 GTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTA 40099 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||| || || ||| ||| ||||| | || | || || || || | || ||||| || Sbjct 40100 GATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTT 40159 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 || | | || | ||||||||||| || ||||| ||||| | ||||| Sbjct 40160 GGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTA 40219 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543 | ||| ||||| | | | | |||| || ||||| || || || | ||| Sbjct 40220 GTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCAT 40279 Query 222544 GTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGTACGATT 222599 | ||| | || || || || || || || | || | | | ||||| || Sbjct 40280 GATCATCTGTTGTGGTCTTTCGGCA--ACCTTGCCATTGATCCTCAAA--AGGTATGACC 40335 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 | ||||| ||||||||||| ||||| | | || || || | | ||| || | |||| Sbjct 40336 TCTCCAGCGTCTTGAACCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACGATGGCGC 40395 Query 222660 CGTCCAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAG-CGC-TCAGACACGAGGG 222716 | |||| || ||| |||||| | | | | | | | | | | || || | | || Sbjct 40396 TATTGAGCT-CGTCTTGGTGCTTCATGACC--GTTGCATATGTCTCGTCTGAGATCATGG 40452 Query 222717 GAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGA 222776 | ||| || ||||| | ||||| | || |||||| || | | | | | || | |||| Sbjct 40453 GCGCGGCCTTGTTGGTTTTTGGGTTGATGTAGTGGTATAGATCCGAGACGACAGCGGAGA 40512 Query 222777 AC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCA 222835 || | || | ||||||||||| || || || |||||||| || | || | ||| | Sbjct 40513 ACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATACGTGCGGCGAGGATGGCG 40571 Query 222836 TAGTCAGGGTGCACGGTGGTCATG 222859 ||||| ||||| | ||||||| Sbjct 40572 TAGTCGGGGTGGGTGACGGTCATG 40595 >seq3272 Length=75414 Score = 178 bits (196), Expect = 2e-39 Identities = 566/868 (65%), Gaps = 44/868 (5%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| ||||| ||||| ||||| ||||| Sbjct 17031 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATCTC 16972 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GCTC-TATCCAAAGACGAGCAGCATTTTC-TCAA 25592 |||||||| | ||| |||| || || | | | | ||||||| || | ||| || Sbjct 16971 TCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGC-GCTTCTTCATCTC 16913 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| |||| ||||| || || || ||||| || || |||||||| || |||| | Sbjct 16912 CCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAGCG 16853 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | |||||||| | |||||| || |||||||| |||||||| || Sbjct 16852 CTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 16793 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || ||||| ||| || Sbjct 16792 GGAGAACATCCACTCCGAGACATACTCC---CTCCTCATCGACACATACAT--CAG-CGA 16739 Query 25770 CGCCGAGAGA-GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || || | | || || || |||||||| |||| || ||||| | ||| Sbjct 16738 GCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAA 16679 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| || |||||| | | ||| | | || |||| | || || | Sbjct 16678 GGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCAT 16619 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || | || |||||||| ||| ||| || || ||| | ||||||||| | Sbjct 16618 CGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTGGTT 16559 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACG 26005 ||| || || |||||| || || ||||| |||||||||||||| | | || | Sbjct 16558 GAAGAAGCGTGGTCTCATGCCTGGCCTC-ACTTTCTCCAACGAGCTCATTTCCCGTGATG 16500 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 |||| | |||| || |||||||||||||| | | | || | | |||| || | Sbjct 16499 AGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTC---TCATCTCAACAACAAGCCAT 16443 Query 26066 C---TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 | |||| | || | ||||||| |||||||| | |||||| ||||||| | Sbjct 16442 CAAACCAAGTG---GTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCC 16386 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | || |||||| || |||||| ||||||||| Sbjct 16385 TCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAATACA 16326 Query 26183 TTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACA 26236 | |||| || ||||| | ||| || |||| ||||| ||||| | ||||| Sbjct 16325 TCGAGTTCGTCGCCGATCGTCT------CCTCCTGGCACTCGGCAACCAGAAGCACTACA 16272 Query 26237 GTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 |||| | ||||| ||||| || ||||| ||||| || | | ||| ||||| ||||| Sbjct 16271 --ACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTT 16214 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| || ||| | ||||| ||||| ||| Sbjct 16213 CTTCGAGAAGCGTGTCGGTGACTACCAA 16186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928805556307200