Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2546 150 2e-31 seq3272 114 2e-20 >seq2546 Length=134672 Score = 150 bits (166), Expect = 2e-31 Identities = 886/1405 (63%), Gaps = 41/1405 (3%) Strand=Plus/Minus Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 |||| ||||| | ||| ||||||| || || | || |||||||| || |||||||| Sbjct 40300 GAAAGACCACAACAGATGATCATGCGTGTGGCTGTGGGAATCCACGGCGAGGACATTGAG 40241 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324 |||| | | ||||| ||| || | ||||| | | ||| |||| || || | || || Sbjct 40240 TCTGCCATTGAGACCTACAACTACATGTCGAACAAGTAC-TTCACACATGCGTCGCCCAC 40182 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 || |||| |||||| ||||| | | ||| || | |||||||| |||| || || Sbjct 40181 GCTGTTCAGTGCTGGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAA 40122 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||| ||| || | || ||||| | || || | | || || ||||| ||| Sbjct 40121 GGATGACAGTATTGATGGGATCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAA 40062 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 || || || |||||| | || |||| | | || | | | || | || Sbjct 40061 CGCCGGAGGCATTGGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGG 40002 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || || ||| | ||| | | || ||||| || || |||||| ||| || || Sbjct 40001 CACCAACGGAACATCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCG 39942 Query 75565 CTATGTAAATCAAGCGGGGCGTCGC-AAG------GGGTCCATCGCGGTCTACTTGGAAC 75617 ||| || | || ||||| | ||| || || | || | ||| | || | Sbjct 39941 CTACGTCGACCA----GGGCGGCAATAAGCGACCTGGCGCCTTTGCCATGTACATCGAGC 39886 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 ||||||| || ||| || | ||| | || | || ||||| || | || |||| Sbjct 39885 CATGGCACGCAGATGTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGG 39826 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 ||| | | ||||| || | |||||| | ||||| || ||||||||||| |||| Sbjct 39825 TTCGTGCTCGCGATCTGTTCTACGGTCTGTGGGTCCCAGATCTCTTCATGAAGCGTGTTG 39766 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 || | | ||| || | | || || || || || ||||| | || | Sbjct 39765 AGCAAAATACCACCTGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTCT 39706 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGA 75857 || | ||||| || | || ||| || || ||||| | | || || Sbjct 39705 ACGGCGCTGAGTTCGAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAGGGTCGTGAGA 39646 Query 75858 CTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | || | || | || | | ||| | || || ||| | | || || ||||| || || Sbjct 39645 CCGTCCGCGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACG 39587 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 |||||||| ||||||||||| ||| ||| ||||| ||||| |||||||||||||| Sbjct 39586 CCATATATCCTTTACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAACC 39527 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || || ||||| || || | |||||||| | | |||||| || Sbjct 39526 ATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGGTCGCC 39467 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG-ACTCGCACTTT 76095 || ||||| | ||||| |||| ||||| | |||||| | ||| || || | || Sbjct 39466 GTGTGCAACCTTGCATCTCTCGCTCTTCCCACCTATGTCGACATCGAGAACGAGCGC-TT 39408 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | |||||| ||||| | ||||| ||| || ||||| || | ||| |||| Sbjct 39407 CGACTTTGAAAAGCTTCACCAGGTCACACAGACCGTCACCAAGAACTTGAACAAGATCAT 39348 Query 76156 TGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 || || || || || ||| || || ||| || | || || | || | Sbjct 39347 CGAGGTCAACCACTACCCAGTGCCAGA-GGCTCGCAAGAGCAACTTCCGTCATCGTCCCA 39289 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269 | ||| | ||||| | ||||| || |||| ||| || | || |||| || Sbjct 39288 TCGGTCTCGGTGTCAATGGTCTTGCCGATG-----CTTTCTTGGCTCTTCGCATGCCTTT 39234 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || || ||| ||| || | || || ||||| || ||||| || ||||| | Sbjct 39233 CGACTCTCCTGAGGCCCGTCAGCTCAACATTCAGATCTTCGAGACCATCTACCACGCTGC 39174 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTT----CCTATGAGACATTTGAGG 76385 || || || || | |||| ||||| || | || ||||||| |||| Sbjct 39173 TCTCACCGCTTCATGCGATCTCGCTG----CCAAGCTTGGACCATACGAGACATACGAGG 39118 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCT 76443 | ||||||| ||| | || | |||||| | || ||||||| |||| || | | | Sbjct 39117 GCTCTCCCGTCTCCAAGGGCGAGCTTCAATACGACATGTGGG-GTGTGACTCCTACTGAT 39059 Query 76444 CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503 | || ||||||| | ||||||| ||| ||| | ||| | || ||| || Sbjct 39058 C-TCTGGGACTGGGCCGCACTCAAGGCCAAGATCGCCGAGCATGGTGTCCGCAACTCGCT 39000 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 | | | || || |||||||| || |||||| | || ||| |||| || || ||||| Sbjct 38999 TCTCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTCAACGAGTGCTT 38940 Query 76564 TGAACCATACACAACAAACATCTAC 76588 || |||||||| | ||||||||| Sbjct 38939 CGAGCCATACACCAGCAACATCTAC 38915 >seq3272 Length=75414 Score = 114 bits (126), Expect = 2e-20 Identities = 524/817 (64%), Gaps = 23/817 (3%) Strand=Plus/Minus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGAC---CCTGAA 64769 ||||||||| || || | ||| | ||||| || ||| |||||||||| | |||||| Sbjct 16996 TTGGACTGCCGAGGAGATCGATCTCTCCAAGGACCTTCACGACTGGAACAAGCGCCTGAA 16937 Query 64770 TGAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 64829 || | || ||||| || ||||||| ||||| |||| || ||||| || Sbjct 16936 CGACGACGAGCGCTTCTTCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGATGGCAT 16877 Query 64830 TGTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCT 64888 || ||||| ||| | | || ||||| |||||||| || ||| || |||| Sbjct 16876 CGTCAACGAGAACCTCATCGAGCGCTTCAGCGGA-GAAGTGCAAATCCCCGAGGCCCGCT 16818 Query 64889 CATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTG 64947 ||||||| | || | ||| ||| | | | || ||| ||||| || | Sbjct 16817 GCTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTC 16759 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAA-GCAGTTATTTGAAGCCATCCAAAC 65006 || |||| |||||| | || | | || | | | | | || | |||||| | | Sbjct 16758 ATCGACACATACATCAGCGA-GCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAA 16700 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTC 65065 | ||||| || |||||||| | ||||| || |||| | | |||| ||| Sbjct 16699 CATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTC 16640 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 | |||| ||| || || | || ||||| | || || |||||||||||||| | Sbjct 16639 -CACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGAT 16581 Query 65126 CATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 | ||| ||| | || | |||||||||||||| ||||||||||| ||||| ||||| Sbjct 16580 CTTTC-GCGTCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCC 16522 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG 65244 || || || |||||||| |||||||| | ||| || |||||| ||| ||| Sbjct 16521 AACGAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCT 16462 Query 65245 ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 | | || | || | | | || | | | |||| | | ||||| || | Sbjct 16461 CATCTCAACAACAAGCCATCAAACCAAGTGGTTGAAGACATCATCACCGAGGCTGTCGTC 16402 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAG 65364 || ||| | | |||| || ||||| ||||||||| ||| |||| |||||| | || Sbjct 16401 ATCGAGCAGGAGTTCCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAG 16342 Query 65365 AAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCA 65424 |||| | | ||||| |||| || | |||||||||||| | | || || Sbjct 16341 CTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCCTGGCACTCGG-----CA 16287 Query 65425 CCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 ||| | ||||| | || || || || || ||||| ||||| || | | Sbjct 16286 ACCAGAAGCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACATCTCTCTCGGAG 16227 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||||| |||||||| |||||||| || || ||||| Sbjct 16226 GCAAGACGAACTTCTTCGAGAAGCGTGTCGGTGACTA 16190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596544394934400