Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1648 279 7e-70 seq2317 152 7e-32 seq864 138 1e-27 seq1086 111 2e-19 seq2448 95.1 2e-14 seq2215 95.1 2e-14 >seq1648 Length=145799 Score = 279 bits (308), Expect = 7e-70 Identities = 514/751 (68%), Gaps = 7/751 (1%) Strand=Plus/Plus Query 195290 ATGTCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAA 195349 ||| | | ||| || ||||||||||| || || || ||||| ||||| || | | | Sbjct 57986 ATGGCACCAGCAATCGGTATCGATTTGGGTACGACCTACTCCTGTGTGGGCATCTACAGA 58045 Query 195350 AATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTT 195409 |||| || | ||||| ||| | || ||||| || ||||| ||||| || |||| ||| Sbjct 58046 GATGACCGCATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTC 58105 Query 195410 GCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAAC 195469 ||||| || || | || || ||| |||| || ||||||| || || || |||||| Sbjct 58106 GCCTTCACCGACACCGAGCGCCTCATTGGTGACTCCGCAAAGAACCAAGTCGCCATGAAC 58165 Query 195470 CCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAA 195529 || |||| || || || ||||| ||||| || || || || ||||| ||| | Sbjct 58166 CCAGTCAACACAGTTTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTCGACGATGCTGAG 58225 Query 195530 GTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGC 195587 || || | ||| || ||| ||| | | | ||| | || | | ||||| |||| Sbjct 58226 GTGCAGGCCGACATGAAGCACTTCCCAT-TCAAGGTCATCAACAAGGGTGGC----AAGC 58280 Query 195588 CTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGT 195647 | | | | || || || | || ||| |||| || ||| | ||||| || ||||| | Sbjct 58281 CGGTCGTGCAGGTCGAGTTCAAAGGCGAGGAGAAGCAGTTTACACCCGAGGAGATTTCAT 58340 Query 195648 CTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAG 195707 | ||||| | | |||||| ||||||||||| | | | | ||| ||||| || Sbjct 58341 CAATGGTCCTCACAAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGGACTGTCAACA 58400 Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 | || ||||| ||||| || || ||||||| || || || || || || || ||||||| Sbjct 58401 ACGCCGTTGTCACTGTTCCAGCATACTTCAACGACTCGCAGCGCCAAGCAACCAAGGACG 58460 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | || || || || ||| || | || ||||| || || || || ||||| | Sbjct 58461 CTGGTCTCATCGCCGGCCTGAACGTCCTGCGCATCATCAACGAGCCTACCGCCGCTGCCA 58520 Query 195828 TTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 |||| |||||||| |||||||| | || | || || || | ||||| ||| | | Sbjct 58521 TTGCCTATGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGATTTGG 58580 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 |||||||||| || ||||| || ||||||| || || | || || ||||| || ||| Sbjct 58581 GTGGTGGTACCTTCGATGTTTCCCTTCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGT 58640 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATT 196007 | |||||||| || || || | ||||| || || ||||| || ||| || || | Sbjct 58641 CCACTGCTGGAGACACCCACTTGGGTGGCGAGGACTTCGACAACCGCCTTGTCAACCACT 58700 Query 196008 TGTCTGATGAGTTCCGTCGAAAGAATAAGAA 196038 | | |||||||| || ||||||||||| Sbjct 58701 TCGTTAATGAGTTCAAACGCAAGAATAAGAA 58731 >seq2317 Length=245020 Score = 152 bits (168), Expect = 7e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || || || |||||||| ||||| || |||| Sbjct 71433 GTGGTATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGT 71374 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||||||||| ||| | || | ||||| ||||| ||||| || || ||||| | Sbjct 71373 CATCAGACACAATCGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCGG 71314 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || || || || || || || || || |||||||| || || || || || |||| | Sbjct 71313 ACCAACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTTTCTGACT 71254 Query 172037 ACAACGTTCAAAAGGAG 172053 ||||| |||| |||||| Sbjct 71253 ACAACATTCAGAAGGAG 71237 Score = 143 bits (158), Expect = 4e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 |||||||| || |||||||| ||||||||||| || || || ||||| || | || | Sbjct 71860 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 71801 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| |||||||| || || ||||| || || || || || || || Sbjct 71800 AAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAG 71741 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || ||||| ||||| || |||||| || |||||| | || |||||||| ||||| ||| Sbjct 71740 CAACTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 71681 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | || || | || || |||||| Sbjct 71680 TTGGTGCTCCGCCTCCGTGGTGGT 71657 >seq864 Length=88037 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| ||||| || || || ||||||||||||||||| |||||||| ||||| ||| Sbjct 47666 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 47607 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| |||| ||||||||| |||||||| || || ||||| || || || ||| | Sbjct 47606 GACAACGTCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 47547 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || || || || || || || || ||||| || || ||| || |||||| | || ||| Sbjct 47546 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTCTCAGCGACTACAACATCCAGAAG 47487 Query 172051 G 172051 | Sbjct 47486 G 47486 >seq1086 Length=95072 Score = 111 bits (122), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || | || || || |||||||| | ||| || Sbjct 28676 ACCGTTCCCGCATACTTCAACGACAACCAGAGGCAAGCCACCAAGGACGCCGGTGCCATC 28617 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 | || || ||| ||| | || ||||| || || || || || || || || || ||| Sbjct 28616 TCTGGCCTCAACGTTCTCCGCATCATCAACGAGCCTACCGCTGCCGCTATCGCCTACGGT 28557 Query 195839 CT-GGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || ||| | | ||| ||| | || || || |||||| ||||| |||||||| Sbjct 28556 CTCGGATCCGGA-AAGTCTGACAAGGAGCGCAACGTCCTGATCTACGATCTTGGTGGTGG 28498 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 || || |||||||| |||||| | || | |||||| | ||| || ||||||||||| Sbjct 28497 CACTTTCGATGTCTCGCTTCTCCACATCCAGGGTGGTGTCTTCACTGTCAAGGCTACTGC 28438 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 |||||| ||||| | |||||| | || |||||| Sbjct 28437 TGGTGACACTCACTTGGGTGGTCAGGACTTCGAT 28404 >seq2448 Length=190995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 221/331 (67%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| || || || | | | || | | || | | ||||| || ||| Sbjct 114426 AAGATGAAGGAGGTCGCCGAGTCCTACCTCGGAGAGAAGGTCACCAACGCAGTCGTCACT 114367 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || | || || || || ||||| || | || || || Sbjct 114366 GTTCCAGCCTACTTCAACGACGCTCAGCGTGCCGCCACCAAGGATGCCGGCGCGATCGCT 114307 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| ||| | | |||| || || || || || || | || || || || Sbjct 114306 GGTCTCAACGTTCTCCGCGTGGTCAACGAGCCCACCGCCGCCGCTTTGGCCTACGGCCTC 114247 Query 195842 GACAAGA---ACAAGGA-CGA-AGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 ||||||| ||||||| || |||| | | ||| |||||||||||||||| Sbjct 114246 GACAAGACCGACAAGGAACGCCAGATCA--------TCGTCTACGATCTCGGTGGTGGTA 114195 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | || |||||||| | || | | || ||| | ||||| || | |||| || | Sbjct 114194 CCTTCGATGTCTCCGTCCTGACCGTCGACCAGGGTGTGTTCGAGGTTCAATCTACCGCCG 114135 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||| ||||| |||||||| |||||||| Sbjct 114134 GTGATACCCATCTCGGTGGTGAGGATTTCGA 114104 >seq2215 Length=151005 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||| ||||||||||||||||| || || || || || || || || || || ||||| || Sbjct 66836 AGACAAGGAAGGCATTCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGA 66777 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || |||||| | || |||||| | || |||||||| || || ||| | ||||| Sbjct 66776 GGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTTCT 66717 Query 172074 AAGGCTTCGGGGTGG 172088 | || || ||||| Sbjct 66716 CCGTCTCCGTGGTGG 66702 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||||||||| || ||||| Sbjct 67000 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAATCGTCC 66941 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAG 171960 ||||| ||||| || |||| ||||||| || | |||| Sbjct 66940 GACACCATCGACAATGTCAAGTCCAAGATCCAGGGTAAG 66902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657834605313600