Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2704 102 2e-16 seq2913 96.9 1e-14 seq3272 93.3 1e-13 >seq2704 Length=262699 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 |||||||| |||||||| |||||| || || || |||||||||||||||||| | || Sbjct 27653 TGGGCGATTGTCATACGGGAGGGAATGGCGTGAGGGTTGATGATGATGTCGGGTGTGAGA 27594 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 ||||| || | ||| ||||| | ||| | | || || | || || || |||||||| Sbjct 27593 CCATCTGCGGAGAAAGGCATGT-CTTCTTGGCGGTAGGTGATACCGATGGTACCCTTTTG 27535 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| |||||| || || || Sbjct 27534 TCCGTGACGAGAGGCGAACTTGTCTCCGAT 27505 >seq2913 Length=112243 Score = 96.9 bits (106), Expect = 1e-14 Identities = 175/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622 ||||| || || |||| ||||| | ||||||||||||||||||||| | || Sbjct 23233 ATCATGATCTCCTCCAGCGCCTTGACAAGACGACGCTGAATATAACCAGTCTCGGCAGTC 23292 Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682 || ||||| |||||||| ||||| | ||||||||||| || |||||||| | ||| | Sbjct 23293 TTGACAGCGGTATCAATCAGACCTTCTCGACCACCCATGGCGTGGAAGAAGAACTCCTGG 23352 Query 302683 GGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 || || || | || | | ||| |||| || || || || | | ||||| | ||| Sbjct 23353 GGGGTGAGGCCACGAAGATAAGAGTTCTCGACAAATCCTCGTGATGCCGGCGAGTAATCG 23412 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||||| || || ||||| | || | ||||| | || | ||||| || || Sbjct 23413 TCCTTGGGGAAATGGGGCAGCACACGGTATTTGAAGCCGAACGGCAATCGCTTGCCCTCG 23472 Query 302803 ACGTTCTGCTGTCCCA 302818 | ||||||||||| Sbjct 23473 AGAGACTGCTGTCCCA 23488 >seq3272 Length=75414 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/370 (66%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 |||||||| ||| | |||| ||||| ||| || || | ||||| |||||| || Sbjct 16845 GGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAAC 16786 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || ||||| || || || || || ||||||| || || || | | Sbjct 16785 ATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAAGCA-ACG 16727 Query 133409 CACAAAC-TATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 ||| || | ||||||||||| | | | || || || ||||| |||||||||| Sbjct 16726 CACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGACTGGGC 16667 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 | ||||||| |||||| | | ||||| |||||| | || ||||| | Sbjct 16666 GCTGCGATGGATCTCCGACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGC 16607 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 | || ||||| || ||| || | ||| || || || ||| | || |||||||| Sbjct 16606 CATCGAAGGCATCTTCTTCTCCGGATCTTTCGCGTCGATCTTCTGGTTGAAGAAGCGTGG 16547 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | ||||| || ||| || ||||| || ||||| | || |||| | ||||| Sbjct 16546 TCTCATGCCTGGCCTCACTTTCTCCAACGAGCTCATTTCCCGTGATGAGGGCATGCACAC 16487 Query 133648 CGAATTTGCC 133657 ||| |||||| Sbjct 16486 CGACTTTGCC 16477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471753861099060