Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2411 178 2e-38 seq3272 149 1e-29 seq3045 123 4e-22 seq2546 116 6e-20 >seq2411 Length=234945 Score = 178 bits (196), Expect = 2e-38 Identities = 183/236 (78%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct 38535 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCACCCGGGAG 38594 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || |||| ||||||||| ||||| | | ||||||| |||||| || | Sbjct 38595 GATGAGTCGGACGGAGGTCTGGATTTCGCGCGAGGAGATCGTGGACTTCTTGTT-GTATG 38653 Query 1485591 CGCCAGGC--GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || || | |||||||| ||| ||| |||| ||||||||||| || |||||| Sbjct 38654 CGGCAAGCTTGGAC-GCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAGGAGTTC 38712 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | ||| ||||| | ||||||||| || ||||||||| ||||||||||| || Sbjct 38713 AGGATGGACATGGCGCGGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 38768 >seq3272 Length=75414 Score = 149 bits (164), Expect = 1e-29 Identities = 212/295 (72%), Gaps = 9/295 (3%) Strand=Plus/Plus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 |||||| |||||||| || |||||||| | ||| ||||| | |||| || ||||| Sbjct 16531 GAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCCGGAGAA 16590 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 |||||||| |||| |||||||||| ||| ||| || |||||| ||| | || Sbjct 16591 GAAGATGCCTTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTGGA---GTTCTT 16647 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 | | |||||| || |||||| || ||||| || | | | || | ||||||| Sbjct 16648 GTCGGAGATCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGAT 16707 Query 794556 GGCGCGAAAGAGGTG-GTCCTT--CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 |||| ||||||| || | | || | || || ||| ||| |||||||||||||| Sbjct 16708 GGCGTTGAAGAGGTACGTGCGTTGCTTG---GGCTCGCTGATGTATGTGTCGATGAGGAG 16764 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||| ||||||||||| || || |||||||||||| || |||||| Sbjct 16765 GGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAG 16819 Score = 147 bits (162), Expect = 3e-29 Identities = 223/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| ||||| |||||||| ||| Sbjct 16173 TGACACCGGCCTTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGA 16232 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||||||||| | |||| Sbjct 16233 GAGAGATGTTCTCCATGAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCCGA 16292 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || || ||||||||||| || ||||| ||||||||||| |||||||| Sbjct 16293 GTGCCAGGAGGAGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCA 16352 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 | |||| |||||| || ||| || | || ||| ||||| | |||||| |||| ||| Sbjct 16353 TTCCGAGGAGCGCACATGGG-AGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCC 16411 Query 794130 TCGATGATGATCTGCCTGGGCACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGC 794189 ||| ||||||| | ||| | | || ||||||| | ||| | | | ||| Sbjct 16412 TCGGTGATGATGTCTTCAACCACTTGGTTTGATGGCTTGTTGTTGAGATGAGAGAACAGC 16471 Query 794190 AGGCAGGCAAAGTCG 794204 ||||||||||||||| Sbjct 16472 AGGCAGGCAAAGTCG 16486 Score = 114 bits (126), Expect = 2e-19 Identities = 160/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | ||| || || ||||||| || |||||||| Sbjct 16814 AAGCAGCGGGCCTCGGGGATTTGCACTTCTCCGCTGAAGCGCTCGATGAGGTTCTCGTTG 16873 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| || || ||||| ||||| |||||||| ||| ||| ||||||||| Sbjct 16874 ACGATGCCATCCGAAGCAGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCG 16933 Query 796261 TCGCTGAG---CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| | || | | ||||| | ||| | ||| |||| ||||||||| ||| Sbjct 16934 TCGTTCAGGCGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTC 16993 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTG 796361 |||||||||||||||||||| |||||||| | ||| ||| |||| Sbjct 16994 CAAAAGGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTGTTG 17037 >seq3045 Length=120461 Score = 123 bits (136), Expect = 4e-22 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | |||||||| || |||||| | ||||||||| | |||||||| | || Sbjct 60082 CTGTTCGAGATCATCCTCGCTGCGAACTACATGGACATCAAGGCGCTCCTCGACGTCGGC 60141 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||||||||||| || ||| | |||||||||||||| || ||||| ||||||||||| || Sbjct 60142 TGCAAGACCGTCGCAAACATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAGACGTTC 60201 Query 2035749 AACATCAAGTACG 2035761 ||||| || ||| Sbjct 60202 AACATTCAGAACG 60214 >seq2546 Length=134672 Score = 116 bits (128), Expect = 6e-20 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || |||| |||||| || || |||||||| || || ||||| Sbjct 39926 GCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTT 39985 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| | ||| || || | ||||| | |||| || | Sbjct 39986 GGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAG 40045 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||| ||||| ||| ||||| | ||||| | ||||| || |||||||| || Sbjct 40046 CCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCC 40105 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || ||| |||||||||| | || ||||| || | || | | | || Sbjct 40106 ATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGT 40165 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || ||| |||| |||||||||| ||| Sbjct 40166 TCCAGCACTGAACAGCGTGGGCGACGC 40192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915886853983820