Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2546 201 1e-46 >seq2546 Length=134672 Score = 201 bits (222), Expect = 1e-46 Identities = 631/961 (66%), Gaps = 25/961 (3%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 |||| ||| || || ||||| ||||| ||| || | | |||||| | ||| ||| Sbjct 39444 GCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCG 39503 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTT-CCGATTGCA 147578 | ||| |||||| || ||| ||||||||| | ||| ||||| || ||| | ||| Sbjct 39504 GTGCAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCA 39563 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| | || || || || |||||||||| ||| | || | ||| | | Sbjct 39564 -GCGTCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATA 39622 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTC 147695 || || | ||| || || || || ||| |||||| ||||| ||||| Sbjct 39623 CCAGAGC---TTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTC 39679 Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACA 147755 ||||| | ||| ||||| |||||||| ||| || || ||||| |||| || || || Sbjct 39680 GTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCA 39739 Query 147756 CATCAGCGACCACATG-TCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 ||||| | ||| || | | || | ||| || ||| || ||||| || ||||||| Sbjct 39740 CATCAAAGTCCAGGTGGTATTTTGC-TCAACACGCTTCATGAAGAGATCTGGGACCCACA 39798 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTC--AAA 147870 | |||| | |||||||| || | | |||| | || || | | || | | | Sbjct 39799 GACCGTAGAACAGATCGCGAGCA---CGAACCTCCTCCTTTCCGTGGTTC-TTGCGGAGA 39854 Query 147871 TT-AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTT 147929 | ||| | | | ||| || |||||||| || || ||||| | ||| | || || Sbjct 39855 TCCAAGAAGGAGA-AGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGG 39913 Query 147930 ACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 ||||| |||||||||||||| | ||| | ||||||||||||| |||| |||||| Sbjct 39914 TCGCTTATTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGG 39973 Query 147987 TTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTT 148045 | | || ||| | | || ||||||||| |||| | |||| ||| || || | | Sbjct 39974 TACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCT-CCGGTTGCGCGAATTC 40032 Query 148046 CGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATG 148105 ||| ||||| | |||||||| ||| ||| ||| || || ||||| || || Sbjct 40033 TGTGGACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTG 40092 Query 148106 TCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTT 148165 | |||||| || || || ||||| | || | | | | | || || || || | Sbjct 40093 TGTCGTAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCT 40152 Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGAC 148225 | | | | ||||| || ||| || ||||| ||| || || || | || | Sbjct 40153 GAGCGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCG 40212 Query 148226 TCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGA 148285 ||| | || |||||||| || || ||||| |||||||| || |||| || | Sbjct 40213 ACATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCA 40272 Query 148286 CGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATC 148345 | ||||||| ||| || ||||||| ||||||||| | |||||| | | ||| ||| Sbjct 40273 CACGCATGATCATCTGTTGTGGTCTTTCGGCAACCTTGCCATTGATCCTCAAAAGGTATG 40332 Query 148346 CATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 | || || || ||| | || ||||| | ||| | ||||| | ||||| |||||| Sbjct 40333 ACCTCTCCAGCGTCTTGAACCCGAAGTATTGGTAGTTGAAATCACGGTCGTACACGATGG 40392 Query 148406 C 148406 | Sbjct 40393 C 40393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476591063176800