Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3272 235 8e-56
seq2411 134 2e-25
seq2546 123 4e-22
>seq3272
Length=75414
Score = 235 bits (260), Expect = 8e-56
Identities = 367/512 (72%), Gaps = 22/512 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||||||||||||||| ||||||||| |||| |
Sbjct 17032 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATC 16974
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891
|| | ||| | ||||| || ||| ||||||||||||| ||||||
Sbjct 16973 TCTCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGCGCTTCTTCATCT 16914
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||||||| ||||| || ||| || ||||||||||| ||||||||| ||
Sbjct 16913 CCCACGTCCTGGCCTTCTT-CGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAG 16855
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||| || ||| | || ||||| || | || ||||| |||||||||
Sbjct 16854 CGCTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 16795
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || || ||||| ||||| |||||||| ||| ||| || ||
Sbjct 16794 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCC- 16736
Query 1456072 GTCGAG--AAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128
| || | | || ||||||| ||||||||||| | || | | | || |||
Sbjct 16735 --CAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAG 16678
Query 1456129 GCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185
|| ||||||||| || ||||| | ||||| | ||| || ||||||| || |
Sbjct 16677 GCTGACTGGGCGCTGCGATGGATCTCCGACAAGAA----CTCCAC-CTTTGCCTGCCGTC 16623
Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTT 1456243
|| ||| |||||||| | |||| |||||||| ||||| || |||| ||| | |||||
Sbjct 16622 TCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTC-GCGTCGATCTTC 16564
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| | |||||||| || |||||||| || ||
Sbjct 16563 TGGTTGAAGAAGCGTGGTCTCATGCCTGGCCT 16532
Score = 147 bits (162), Expect = 3e-29
Identities = 230/324 (71%), Gaps = 4/324 (1%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511
||||| ||||||||||| ||||| | | | ||| ||||||||| || | | | |
Sbjct 16493 TGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCTCAACAACAAGCCATCAAACCAAG 16434
Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571
|| | | |||||| |||||| |||| |||||| | ||||| ||| || | |
Sbjct 16433 TGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCC 16374
Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631
| || |||||| |||| |||||||||| |||||||||||| ||||| | | || ||
Sbjct 16373 TCCCATGTGCGCTCCTCGGAATGAACGCCA-AGCTCATGTGCCAATACATCG-AGTTCGT 16316
Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691
|||||| || || ||| ||| |||||| | ||||||||||| | ||||||| |
Sbjct 16315 CGCCGATCGTCTCCTCCTGGCACTCGGCAAC-CAGAAGCACTACAACGCCACCAACCCCT 16257
Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750
|| | |||||| ||||| |||| |||||||| ||||| |||||| || || |
Sbjct 16256 TCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGAAGCGTGTCG 16197
Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774
| || ||| |||||||| ||||
Sbjct 16196 GTGACTACCAAAAGGCCGGTGTCA 16173
>seq2411
Length=234945
Score = 134 bits (148), Expect = 2e-25
Identities = 168/226 (74%), Gaps = 12/226 (5%)
Strand=Plus/Minus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
|| ||||||||||| |||||| || | | ||| |||||| ||||||| |||
Sbjct 38768 GTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACCGCGCCATGTCCATC 38715
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTG 725036
||||||| || ||||||||||| |||| ||| ||| |||||||| ||| || ||
Sbjct 38714 CTGAACTCCTTCGTCAACGACATCTTCGAGCGCGTCGCAACCGAGGC--GTCCAAGCTTG 38657
Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096
||| | ||||||| ||||||| | ||||||| ||||||||| |||| || ||
Sbjct 38656 CCGCA-TACAACAAGAAGTCCACGATCTCCTCGCGCGAAATCCAGACCTCCGTCCGACTC 38598
Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | | || || ||||||| |||||||||||| ||||||||||
Sbjct 38597 ATCCTCCCGGGTGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 38552
>seq2546
Length=134672
Score = 123 bits (136), Expect = 4e-22
Identities = 209/303 (69%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942
|||||| | ||||||| | ||| ||||| ||| |||||||||| || | |||
Sbjct 40228 ACCTACAACTACATGTCGAACAAGTACTTCACACATGCGTCGCCCACGCTGTTCAGTGCT 40169
Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002
|| || || | | ||| | || ||||| || | |||||||||| || ||
Sbjct 40168 GGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGTATT 40109
Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062
|| || ||||| ||||| || ||| ||||| | ||||| ||| ||||| |||||
Sbjct 40108 GATGGGATCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAACGCCGGAGGCATT 40049
Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122
|| | || |||| | ||||| | || || ||| | |||||||||||
Sbjct 40048 GGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGGCACCAACGGAACA 39989
Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|||||||| || || |||||||| || || |||||| |||| || |||||||||||||||
Sbjct 39988 TCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAG 39929
Query 260183 TGC 260185
||
Sbjct 39928 GGC 39926
Score = 107 bits (118), Expect = 3e-17
Identities = 160/222 (72%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGTTGC 262936
||||||||||| |||||| ||| | | || | ||||||| | ||||||||| | |
Sbjct 39056 CTGGGACTGGGCCGCACTCAAGGCCAAGAT-CGCCGAGCATGGTGTCCGCAACTCGCTTC 38998
Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996
|||| || | |||||| || || | || ||||||||| ||||| || |||| ||||
Sbjct 38997 TCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTCAACGAGTGCTTCG 38938
Query 262997 AGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055
|| ||| ||| |||||||||||| | || || |||||| | || || || || |||
Sbjct 38937 AGC-CATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAGTTCCAAGTTGTC 38879
Query 263056 AACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG 263097
|||| || ||||| | |||| | ||| |||||||||
Sbjct 38878 AACCCATGGTTGCTCAAGGACTTGGTTGAGCGTGGCCTGTGG 38837
Score = 96.9 bits (106), Expect = 5e-14
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151
|| |||||| ||||| ||| ||| || | ||||||||||||||| || || | ||||
Sbjct 39630 AGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTTACA 39571
Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210
||||||| | |||| | ||||||||| |||| |||| |||| | ||| |||||
Sbjct 39570 AGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAACCATCCGCAG-CTCCAAC 39512
Query 262211 CTGTGCACCGAGATCGTCCAGT 262232
|| |||||||||||| || |||
Sbjct 39511 CTCTGCACCGAGATCATCGAGT 39490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177485192787560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |