Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3272 235 8e-56 seq2411 134 2e-25 seq2546 123 4e-22 >seq3272 Length=75414 Score = 235 bits (260), Expect = 8e-56 Identities = 367/512 (72%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||||||||| ||||||||| |||| | Sbjct 17032 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTTTGGACTGCCGAGGAGATCGATC 16974 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || ||| ||||||||||||| |||||| Sbjct 16973 TCTCCAAGGACCTTCACGACTGGAACAAGCGCCTGAACGACGACGAGCGCTTCTTCATCT 16914 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| || ||| || ||||||||||| ||||||||| || Sbjct 16913 CCCACGTCCTGGCCTTCTT-CGCTGCTTCGGATGGCATCGTCAACGAGAACCTCATCGAG 16855 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||| || ||| | || ||||| || | || ||||| ||||||||| Sbjct 16854 CGCTTCAGCGGAGAAGTGCAAATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 16795 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||| ||||| |||||||| ||| ||| || || Sbjct 16794 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCC- 16736 Query 1456072 GTCGAG--AAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | || | | || ||||||| ||||||||||| | || | | | || ||| Sbjct 16735 --CAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAG 16678 Query 1456129 GCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 || ||||||||| || ||||| | ||||| | ||| || ||||||| || | Sbjct 16677 GCTGACTGGGCGCTGCGATGGATCTCCGACAAGAA----CTCCAC-CTTTGCCTGCCGTC 16623 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTT 1456243 || ||| |||||||| | |||| |||||||| ||||| || |||| ||| | ||||| Sbjct 16622 TCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTTTC-GCGTCGATCTTC 16564 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| | |||||||| || |||||||| || || Sbjct 16563 TGGTTGAAGAAGCGTGGTCTCATGCCTGGCCT 16532 Score = 147 bits (162), Expect = 3e-29 Identities = 230/324 (71%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||| | | | ||| ||||||||| || | | | | Sbjct 16493 TGCACACCGACTTTGCCTGCCTGCTGTTCTCTCATCTCAACAACAAGCCATCAAACCAAG 16434 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 || | | |||||| |||||| |||| |||||| | ||||| ||| || | | Sbjct 16433 TGGTTGAAGACATCATCACCGAGGCTGTCGTCATCGAGCAGGAGTTCCTCACAGACGCCC 16374 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 | || |||||| |||| |||||||||| |||||||||||| ||||| | | || || Sbjct 16373 TCCCATGTGCGCTCCTCGGAATGAACGCCA-AGCTCATGTGCCAATACATCG-AGTTCGT 16316 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 |||||| || || ||| ||| |||||| | ||||||||||| | ||||||| | Sbjct 16315 CGCCGATCGTCTCCTCCTGGCACTCGGCAAC-CAGAAGCACTACAACGCCACCAACCCCT 16257 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || | |||||| ||||| |||| |||||||| ||||| |||||| || || | Sbjct 16256 TCGATTTCATGGAGAACATCTCTCTCGGAGGCAAGACGAACTTCTTCGAGAAGCGTGTCG 16197 Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774 | || ||| |||||||| |||| Sbjct 16196 GTGACTACCAAAAGGCCGGTGTCA 16173 >seq2411 Length=234945 Score = 134 bits (148), Expect = 2e-25 Identities = 168/226 (74%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| |||||| || | | ||| |||||| ||||||| ||| Sbjct 38768 GTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACCGCGCCATGTCCATC 38715 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTG 725036 ||||||| || ||||||||||| |||| ||| ||| |||||||| ||| || || Sbjct 38714 CTGAACTCCTTCGTCAACGACATCTTCGAGCGCGTCGCAACCGAGGC--GTCCAAGCTTG 38657 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 ||| | ||||||| ||||||| | ||||||| ||||||||| |||| || || Sbjct 38656 CCGCA-TACAACAAGAAGTCCACGATCTCCTCGCGCGAAATCCAGACCTCCGTCCGACTC 38598 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | || || ||||||| |||||||||||| |||||||||| Sbjct 38597 ATCCTCCCGGGTGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 38552 >seq2546 Length=134672 Score = 123 bits (136), Expect = 4e-22 Identities = 209/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | ||||||| | ||| ||||| ||| |||||||||| || | ||| Sbjct 40228 ACCTACAACTACATGTCGAACAAGTACTTCACACATGCGTCGCCCACGCTGTTCAGTGCT 40169 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | | ||| | || ||||| || | |||||||||| || || Sbjct 40168 GGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGTATT 40109 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| ||||| || ||| ||||| | ||||| ||| ||||| ||||| Sbjct 40108 GATGGGATCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAACGCCGGAGGCATT 40049 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || |||| | ||||| | || || ||| | ||||||||||| Sbjct 40048 GGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGGCACCAACGGAACA 39989 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| || || |||||||| || || |||||| |||| || ||||||||||||||| Sbjct 39988 TCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAG 39929 Query 260183 TGC 260185 || Sbjct 39928 GGC 39926 Score = 107 bits (118), Expect = 3e-17 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGTTGC 262936 ||||||||||| |||||| ||| | | || | ||||||| | ||||||||| | | Sbjct 39056 CTGGGACTGGGCCGCACTCAAGGCCAAGAT-CGCCGAGCATGGTGTCCGCAACTCGCTTC 38998 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 |||| || | |||||| || || | || ||||||||| ||||| || |||| |||| Sbjct 38997 TCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTCAACGAGTGCTTCG 38938 Query 262997 AGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 || ||| ||| |||||||||||| | || || |||||| | || || || || ||| Sbjct 38937 AGC-CATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAGTTCCAAGTTGTC 38879 Query 263056 AACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG 263097 |||| || ||||| | |||| | ||| ||||||||| Sbjct 38878 AACCCATGGTTGCTCAAGGACTTGGTTGAGCGTGGCCTGTGG 38837 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | ||||||||||||||| || || | |||| Sbjct 39630 AGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTTACA 39571 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||||| | |||| | ||||||||| |||| |||| |||| | ||| ||||| Sbjct 39570 AGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAACCATCCGCAG-CTCCAAC 39512 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || |||||||||||| || ||| Sbjct 39511 CTCTGCACCGAGATCATCGAGT 39490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177485192787560