Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2546 116 4e-21 seq2317 107 2e-18 seq864 86.0 6e-12 >seq2546 Length=134672 Score = 116 bits (128), Expect = 4e-21 Identities = 568/892 (64%), Gaps = 25/892 (3%) Strand=Plus/Minus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 ||| | |||| ||||| ||| | || ||| || ||||| ||| | |||| ||| Sbjct 40330 TACCTTTTGAGGATCAATGGCAAGGTTGCCGAAAGACCACAACAGATGATCATGCGTGTG 40271 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 || ||||| || |||||||| |||||||| | ||| | || || ||| | ||||| Sbjct 40270 GCTGTGGGAATCCACGGCGAGGACATTGAGTCTGCCATTGAGACCTACAACTACATGTCG 40211 Query 7645 TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACA---AACGCGCCT 7701 || | || || || || |||||||| |||| || || ||| ||||| | Sbjct 40210 AACAAGTACTTCACACATGCGTCGCCCACGCTGTTCAGTGCTGGAACACCCAACGC---T 40154 Query 7702 CAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAAC 7761 || || | || || || | | |||| || ||||| || || || || ||| || Sbjct 40153 CAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGTATTGATGGGATCTACGAC 40094 Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAAC 7821 || ||| ||||||| || || || ||| ||| || || || || ||||| || Sbjct 40093 ACACTGAAGACCTGCGCCATGATCTCTAAGAACGCCGGAGGCATTGGGCTCAACGTCCAC 40034 Query 7822 GACGTGCGCGCCAACGGTAGCCG-CATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGA 7880 | ||||| | ||| ||| |||| ||||||||||| | ||| |||| | | Sbjct 40033 AGAATTCGCGCAACCGG-AGCATACATCAGCGGCACCAACGGAACATCCAACGGTCTCGT 39975 Query 7881 GCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCG 7937 |||||| |||| ||||| || ||| | | || | || |||||||| || ||||| Sbjct 39974 ACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAGGGCGGCAATAAGCG 39915 Query 7938 CAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAA 7997 |||||| |||||| || | ||||| |||||||| || | | | | | | | Sbjct 39914 ACCTGGCGCCTTTGCCATGTACATCGAGCCATGGCACGCAGATGTCTTCTCCTTCTTGGA 39855 Query 7998 TCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTG 8057 ||| || ||| || || || || |||||||| |||| ||| |||| Sbjct 39854 TCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCTCGCGATCTGTTCTACGGTCTGTG 39795 Query 8058 GGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAA--TGGTCGCTCATGTGC 8115 ||| || ||||| || |||| ||| ||| | | | || | ||| | | |||||| Sbjct 39794 GGTCCCAGATCTCTTCATGAAGCGTGTTGA--GCAAAATACCACCTGGACTTTGATGTGC 39737 Query 8116 CCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAA 8175 || | ||||| | | || ||||| | | || || | ||||| | Sbjct 39736 CCTCACGAGTGCCCCGGTCTGGCTGATGTCTACGGCGCTGAGTTCGAGGAGCTGTACGAG 39677 Query 8176 CAATACGAACACGACGGC--GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCG-- 8231 | |||||| | || ||| | || |||| | | | |||| | | || | | Sbjct 39676 CGATACGAGCGTGAGGGCAAGGGT-CGTGAG---ACCGTCCGCGCTC-AGAAGCTCTGGT 39622 Query 8232 -CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTT 8290 ||||| |||| ||||| ||| ||||| | ||| || || || ||||| |||||| Sbjct 39621 ATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTTACAAGGACGCTG 39562 Query 8291 GCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTG 8350 ||||| ||| ||||| || | || |||| ||||| | || ||| || ||| | | Sbjct 39561 CCAACGGCAAGAGCAACCAGAAGAATTTGGGAACCATCCGCAGCTCCAACCTCTGCACCG 39502 Query 8351 AAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 | || | |||||| || || || || || ||||| ||||| || || || Sbjct 39501 AGATCATCGAGTACACTGCTCCTGATGAGGTCGCCGTGTGCAACCTTGCATC 39450 >seq2317 Length=245020 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || |||||||| ||||| ||||||||||||||| | ||| | ||| || Sbjct 71448 ACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCA 71507 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || || ||||| ||||| || || || || ||||| || || || || Sbjct 71508 AGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 71567 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| ||||| ||||| || | || || || || Sbjct 71568 ATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTG 71627 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 71628 CCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || |||||| | || || | ||| | ||| || ||| ||||| |||||||||||||| Sbjct 71198 CTGTCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 71257 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || || | ||| || ||||| ||||| || || || | ||||| || || || Sbjct 71258 AGAAAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGG 71317 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || || || || ||||| || || || || ||| | |||||| || || || Sbjct 71318 TGGGATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTC 71377 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| ||||| || || || || ||||| | || || ||||| |||||||| Sbjct 71378 CACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 >seq864 Length=88037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||||| | || | || ||||| || || || || || | Sbjct 47486 CCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 47545 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| ||||| || || || || || || || || || ||||| || ||||| || Sbjct 47546 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGT 47605 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||||||||| ||||| ||||| || || || || || || | || || |||| Sbjct 47606 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 47665 Query 134704 AA 134705 || Sbjct 47666 AA 47667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377046917600