Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3272 116 5e-21 >seq3272 Length=75414 Score = 116 bits (128), Expect = 5e-21 Identities = 291/438 (66%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| ||||| || || |||||||| || || || |||||| | | || || || Sbjct 16184 TTTTGGTAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTC 16243 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||||||||| || || || || || || || | || | || | | | | Sbjct 16244 TCCATGAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGG 16303 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | ||| || || || || |||||| ||| | | |||||||| | ||| Sbjct 16304 AGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGC 16363 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | ||| || || || || || ||||| | |||||| | || ||||| || || Sbjct 16364 GCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGAT---- 16419 Query 39566 GATGT-TACTACCTCATCACTCGGTGGAT-GCAAT--AAATGTTTAAACATTAAGCAGGC 39621 ||||| | | ||| | | | | ||| | | | | ||| |||| | |||||| Sbjct 16420 GATGTCTTCAACCACTTGGTTTGATGGCTTGTTGTTGAGATGAGAGAACAGCAGGCAGGC 16479 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||||| || | ||||||||| | ||| | ||||| || || ||||| ||||| Sbjct 16480 AAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGG 16539 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCC 39741 ||| ||||||||||| || | ||| || || | || |||||||| || ||||||||||| Sbjct 16540 CATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGATGCC 16599 Query 39742 TTCTACTGCTGCAAATGC 39759 ||| | || ||||| || Sbjct 16600 TTCGATGGCGGCAAAGGC 16617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686879778103200