Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2546 136 5e-27 seq3272 113 6e-20 >seq2546 Length=134672 Score = 136 bits (150), Expect = 5e-27 Identities = 885/1406 (63%), Gaps = 43/1406 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||||| || ||||| || || |||| ||| || | |||||| Sbjct 38915 GTAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGA 38974 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | ||| ||| || | ||| | ||| ||| | Sbjct 38975 AGCAGTTGGCATGGGAGCGACGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGC 39034 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| | ||||||| || || | | || |||| |||||||||| | ||| Sbjct 39035 CTTGAGTGCGGCCCAGTCCCAGA-GATCAGTAGGAGTCACAC-CCCACATGTCGTATTGA 39092 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG----AACCTTGGGCTTC 110940 ||| | || | ||| ||||||| ||||| | || || || | || ||||| | Sbjct 39093 AGCTCGCCCTTGGAGACGGGAGAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGG----C 39148 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 ||| | || || || || | ||||| || ||||| || ||||| || || Sbjct 39149 AGCGAGATCGCATGAAGCGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTT 39208 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCC 111055 | || ||| ||| || || || |||| || | || ||| |||| Sbjct 39209 GAGCTGACGGGCCTCAGGAGAGTCGAAAGGCATGCGAAGAGCCAAGAAAG-----CATCG 39263 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || ||||| | ||||| | ||| || || | || || | || ||| || || || Sbjct 39264 GCAAGACCATTGACACCGAGACCGATGGGACGATGACGGAAGTTGCTCTTGCGAGCC-TC 39322 Query 111116 TCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 | || || || || || |||| ||| | || ||||| || ||| ||| Sbjct 39323 TGGCACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGT 39382 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT-CTCTTCATTGACATACTTTGGAA 111233 || | ||||| |||||| | || || | || || ||| | |||||| | |||| Sbjct 39383 GACCTGGTGAAGCTTTTCAAAGTCGAA-GCGCTCGTTCTCGATGTCGACATAGGTGGGAA 39441 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | |||| ||||| | ||||| || || |||||| | | |||||||| | || | Sbjct 39442 GAGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCT 39501 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || ||||||||||| ||||| ||||| |||| Sbjct 39502 CGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGG 39561 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 || |||||||| || || || ||||| || ||||| || || | | ||| || || | Sbjct 39562 CAGCGTCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCAT 39621 Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGT 111471 ||| | | || | || | || | | | ||| | ||||| |||||| Sbjct 39622 ACCAGAGCTTCTG-AGCGCGGACGGTCTC-ACGACCCTTGCCCTCACGCTCGTATCGCTC 39679 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| || | || ||||| | || | || | ||||| || || || || || Sbjct 39680 GTACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCA 39739 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | | || ||| | || |||||| ||||||||||| || ||||| | |||||| Sbjct 39740 CATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAG 39799 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | || ||||| | | ||| |||| || | || ||||| || | || | Sbjct 39800 ACCGTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAA 39859 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATA------GACTGCGATAGATCCCTT 111705 ||| | || ||| |||||||||||||| | || | ||| || || ||| Sbjct 39860 GAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTT 39919 Query 111706 -TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | ||||| || | || ||||| || ||| |||||| || || ||||| || | Sbjct 39920 ATTGCCGCCC----TGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTA 39975 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 111824 | ||| | ||| || || || || | || | | | || | | | Sbjct 39976 CGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGT 40035 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 ||| || | |||||| || || || ||| ||||| || || | | || || Sbjct 40036 GGACGTTGAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGT 40095 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | ||||| || | || ||| ||||| || |||| |||||||| | || ||| | Sbjct 40096 CGTAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAG 40155 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGAC 112003 | ||||| |||||| |||| || || || | || || |||| ||| | | ||| Sbjct 40156 CGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAA-GTACTTGTTCGAC 40214 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || | || ||| ||||| | | |||| |||||||| || |||||||| || | || || Sbjct 40215 ATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACA 40274 Query 112064 CGCATGAACATGTACTGTGGGGTTTC 112089 ||||||| ||| | ||||| |||| Sbjct 40275 CGCATGATCATCTGTTGTGGTCTTTC 40300 >seq3272 Length=75414 Score = 113 bits (124), Expect = 6e-20 Identities = 278/419 (66%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||| ||||| || | || ||||| ||||| Sbjct 16190 TAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATG 16249 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 || || || || || | ||||| | ||| || || | | ||||| Sbjct 16250 AAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTG-----CCGAGTGCCAGGAGGA 16304 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||| ||||| | | |||| || | |||||| |||| ||| Sbjct 16305 GACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCG 16364 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||||||||| ||||| || |||| | | ||| || | || ||||| | | |||| Sbjct 16365 CACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGT 16424 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | || | | | || | || | | ||| ||| |||||| | Sbjct 16425 CTTCAACCACTTGGTTTGATGGCTTGTTGTTGAGATGAGAGAACAGCAGGCAGGCAAAGT 16484 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | |||||||| |||||||| || || || ||||| || || ||||||| Sbjct 16485 CGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGCATGA 16544 Query 122726 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||| |||||||||||||| | || | ||| ||| || |||||||||||||| || || Sbjct 16545 GACCACGCTTCTTCAACCAGAAGATCGACGC-GAAAGATCCGGAGAAGAAGATGCCTTC 16602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005465648000